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Pull requests: knowledgesystems/cmo-pipelines

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Pull requests list

Add dag to back up metadata db and logs
#1335 opened May 7, 2026 by callachennault Contributor • Draft
3 tasks
Post RFC100 cleanup
#1334 opened May 5, 2026 by jamesqo Contributor Loading…
1
Update database properties file path in import script
#1329 opened May 4, 2026 by jamesqo Contributor Loading…
ClickHouse version of import users script
#1317 opened Apr 8, 2026 by jamesqo Contributor Loading…
25
Automatically purge studies from the triage portal that are >30 days old
#1313 opened Mar 27, 2026 by jamesqo Contributor Loading…
Add data integrity checks to the import process
#1312 opened Mar 27, 2026 by jamesqo Contributor Loading…
Add EC2 start / stop functions for use in public & genie dags
#1309 opened Mar 18, 2026 by jamesqo Contributor Loading…
Remove references to CDD for add_clinical_metadat_headers script
#1307 opened Feb 27, 2026 by averyniceday Collaborator Loading…
Add biobank merge code
#1304 opened Feb 24, 2026 by callachennault Contributor Loading…
3 tasks done
Import types of cancer through the cbioportal-core importer
#1299 opened Feb 12, 2026 by jamesqo Contributor • Draft
Pre-import processing steps required for IMPACT studies to pass validation
#1298 opened Feb 10, 2026 by jamesqo Contributor • Draft
4
Replace usage of the pipelines JAR with cbioportalImporter within DMP script
#1297 opened Feb 9, 2026 by jamesqo Contributor • Draft
Address data issues that are causing the MSK-IMPACT studies to fail validation
#1293 opened Feb 2, 2026 by jamesqo Contributor • Draft
2
Update sophia script
#1242 opened Sep 8, 2025 by callachennault Contributor • Draft
Generalized import dag do not merge
#1232 opened May 8, 2025 by callachennault Contributor • Draft
4 tasks
Access-heme Support do not merge
#1106 opened Jan 30, 2024 by averyniceday Collaborator Loading…
3 tasks
Bump cryptography from 3.1.1 to 39.0.1 in /import-scripts dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1010 opened Feb 8, 2023 by dependabot Bot Loading…
filter germline events and all synonymous events do not merge
#1003 opened Jan 31, 2023 by sheridancbio Contributor Loading…
1
Bump spring-web from 5.2.6.RELEASE to 6.0.0 dependencies Pull requests that update a dependency file java Pull requests that update Java code
#977 opened Dec 10, 2022 by dependabot Bot Loading…
Bump certifi from 2020.6.20 to 2022.12.7 in /import-scripts dependencies Pull requests that update a dependency file python Pull requests that update Python code
#976 opened Dec 8, 2022 by dependabot Bot Loading…
Bump jackson-databind from 2.11.2 to 2.12.7.1 dependencies Pull requests that update a dependency file java Pull requests that update Java code
#973 opened Nov 16, 2022 by dependabot Bot Loading…
Bump protobuf from 3.13.0 to 3.18.3 in /import-scripts dependencies Pull requests that update a dependency file python Pull requests that update Python code
#970 opened Sep 23, 2022 by dependabot Bot Loading…
Change circle workflow name
#961 opened Jun 14, 2022 by mandawilson Contributor Loading…
check for new filenames before merge/subset enhancement import-scripts
#856 opened Jul 19, 2021 by sheridancbio Contributor Loading…
50
GENIE subset fixes
#819 opened Feb 3, 2021 by rmadupuri Loading…
1
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