Access-heme Support#1106
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pom changes for pulling moved dependencies changes to java args to silence warnings Co-authored-by: cbioportal import user <cbioportal_importer@pipelines.cbioportal.mskcc.org>
* remove annotated MAF to prevent duplicate * Update subset_and_merge_crdb_pdx_studies.py --------- Co-authored-by: Avery Wang <averyjwang@gmail.com>
- CVR fetcher: new endpoint - automation_env: new study directory parallel to impact, archer, access, etc. - fetch_dmp_data: calls for fetching cvr, generating supp data, merging into solid_heme - dmp-import-vars: redcap support
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MPath is releasing a new gene panel and endpoint (only normal samples, no germline)
Includes the following changes:
Tried to use following naming convention:
Additional changes not a part of this PR:
DO NOT MERGE: waiting on confirmation of endpoint and test setup from MPath team