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Replace usage of the pipelines JAR with cbioportalImporter within DMP script#1297

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replace-pipelines-jar
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Replace usage of the pipelines JAR with cbioportalImporter within DMP script#1297
jamesqo wants to merge 1 commit into
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replace-pipelines-jar

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@jamesqo jamesqo commented Feb 9, 2026 •
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Blockers:

  • Need to address Python version mismatch -- the pipelines3 server currently uses Python 3.7, while the importer script needs Python 3.8+ to run
  • Data issues listed here
  • Behavioral differences listed here

@jamesqo jamesqo marked this pull request as draft February 10, 2026 14:29
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