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Pull requests: wwood/CoverM

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Pull requests list

Add --gff flag for per-gene coverage in contig and genome modes
#298 opened Jul 2, 2026 by wwood Owner Loading…
3
Add rammap as a supported read mapping program
#297 opened Jul 2, 2026 by wwood Owner Loading…
4
Add minibwa as a mapper
#295 opened Jun 25, 2026 by wwood Owner Loading…
1
lexicmap: Initial efforts.
#294 opened Jun 19, 2026 by wwood Owner • Draft
Add makedb mode to pre-generate mapping databases
#293 opened Jun 11, 2026 by wwood Owner Loading…
3
Add mean_zero_coverage_length coverage method
#292 opened Jun 10, 2026 by wwood Owner Loading…
2
Add bowtie2 as a mapper
#291 opened Jun 10, 2026 by wwood Owner Loading…
2
Add coverm makedb command to pre-generate mapping indexes
#290 opened Jun 10, 2026 by wwood Owner Loading…
3
Add --consensus-genomes-folder option to emit per-sample consensus FASTA for covered genomes codex
#288 opened Mar 16, 2026 by wwood Owner Loading…
3
Add minimap2-lr-hq mapper support; fix clippy warnings and remove flaky help test codex
#284 opened Jan 9, 2026 by wwood Owner Loading…
Add x-mapper support codex
#272 opened Sep 2, 2025 by wwood Owner Loading…
Add GC-bias analysis notebook for Mycoplasma genitalium codex
#268 opened Aug 23, 2025 by wwood Owner Loading…
Add GC bias correction mode codex
#267 opened Aug 23, 2025 by wwood Owner Loading…
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