UW-Madison LOCI
- 39 followers
- Madison, WI, USA
- https://loci.wisc.edu
- @UWMadisonLOCI
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Repositories
- flamingo-stitcher Public
Standalone light-sheet tile stitching (CLI + GUI) for Flamingo T-SPIM data, extracted from py2flamingo.
- qupath-extension-qpsc Public
Java based extension for QuPath allowing control of a microscope through MicroManager
- qupath-extension-cell-analysis-tools Public
Python-powered clustering and phenotyping for highly multiplexed imaging data in QuPath
- cbmark_logger Public
Data logger for cathode benchmarking experiment for the e-beam system. Logs and displays select data from experiment.
- qupath-extension-tiles-to-pyramid Public
An extension to allow the creation of a pyramidal image file from individual tiles, based on known tile positions.
- polscope_library Public
Birefringence reconstruction for LC-PolScope microscopes (numpy only, no phase). Ported from waveorder/recOrder.
- qupath-extension-image-export-toolkit Public
QuIET - QuPath Image Export Toolkit: batch export images for publication or model training
- qupath-extension-wizard-wand Public
Enhanced wand tool for QuPath with scroll-wheel sensitivity, dwell expansion, live smoothing, edge-aware selection, and more.
- qupath-extension-project-metadata-browser Public
Browse, filter, and edit metadata for all images in a QuPath project.
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