update actions

.github/workflows/basic_checks.yaml

@@ -8,7 +8,7 @@ env:
 jobs:
   r-build-and-check:
     runs-on: ubuntu-latest
-    container: bioconductor/bioconductor_docker:RELEASE_3_15
+    container: bioconductor/bioconductor_docker:RELEASE_3_16
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
     steps:
@@ -17,10 +17,10 @@ jobs:
       - name: Query dependencies and update old packages
         run: |
           # We'll install the specific versions from the install instructions
-          BiocManager::install("stemangiola/[email protected].4")
-          BiocManager::install("stemangiola/[email protected].1")
-          BiocManager::install("stemangiola/[email protected].1")
-          BiocManager::install("stemangiola/[email protected].2")
+          BiocManager::install("stemangiola/[email protected].10")
+          BiocManager::install("stemangiola/[email protected].4")
+          BiocManager::install("stemangiola/[email protected].3")
+          BiocManager::install("stemangiola/[email protected].6")
 
           # Then install the other dependencies in the usual way
           BiocManager::install(ask=FALSE)

README.md

@@ -29,10 +29,11 @@ If you want to install the packages and material post-workshop, the instructions
 Sys.setenv("R_REMOTES_NO_ERRORS_FROM_WARNINGS" = "true")
 
 # Install same versions used in the workshop
-BiocManager::install("stemangiola/[email protected]")
-BiocManager::install("stemangiola/[email protected]")
-BiocManager::install("stemangiola/[email protected]")
-BiocManager::install("stemangiola/[email protected]")
+
+BiocManager::install("stemangiola/[email protected]")
+BiocManager::install("stemangiola/[email protected]")
+BiocManager::install("stemangiola/[email protected]")
+BiocManager::install("stemangiola/[email protected]")
 
 # Install workshop package