Query DGIdb using the rDGIdb package

Queries DGIdb through the R/Bioconductor rDGIdb package and saves the results to text files.

Installation

rDGIdb is available on Bioconductor.

To install the rDGIdb package, type this into your R console:

source("https://bioconductor.org/biocLite.R")
biocLite("rDGIdb")

Usage

In the terminal, use:

Rscript query_dgidb.r path/to/input path/to/output min-db-support

Licence

This script is release under the MIT licence.

Contact

thomas.thurnherr (at) bsse.ethz.ch