MCView 0.2.51

MCView 0.2.51

• Added categorical filtering to the Markers tab.
• Added sina/violin plots to the Cell types tab and added the option to set x axis to categorical metadata.
• Added facets to the Cell types tab.

MCView 0.2.50

• Added "Gene correlation" tab.

MCView 0.2.49

MCView 0.2.49

• Added "Apply" button (and apply behaviour) to the 'Markers' tab.

MCView 0.2.48

• Added controls for plotly download format, width, height and scale.
• Fix: new cell types loaded from annotation file were not updated in all tabs.

MCView 0.2.47

• Fix: diff. expr. crashed when comparing metacells.

MCView 0.2.46

• Added "Move up" and "Move down" buttons to the 'Cell types' tab.
• Added "Random seed" input to the 'Manifold' tab.

MCView 0.2.45

• Reorder boxplot in cell types tab by cell type colors table.
• Added "Show correlations" button, and compute correlation based on selected cell types in the 'Cell types' tab.

MCView 0.2.44

MCView 0.2.44

• Added "User DE genes" button to the 'Markers' tab, that uses the significantly differentially expressed genes from the 'Diff. Expr.' tab.

MCView 0.2.43

• Added "Highlight selected genes" option to the 'Markers' tab.
• Added help for the 'Markers' tab.
• Fix: changing force_cell_type did not update the heatmap when in zoom mode.
• Fix: show "Enrichment type" toggle when filtering by clipboard, and allow updating genes.
• Added profiling mode for debug purposes.

MCView 0.2.42

• Fix: apps did not start when light_version was TRUE.

MCView 0.2.41

• Projects are now deployment-ready by default. An app.R file is automatically added during dataset import.
• Unified the project and bundle structures - no need for a separate bundle creation step for basic deployment.
• Added "Download data" button.
• Keep the creation command in the config directory.
• Added copy_source_file parameter to import_dataset to optionally copy the source h5ad file instead of creating a symlink.
• Improved project directory handling with streamlined overwrite logic.
• Added missing dataset name detection in import_dataset.

0.2.40

• Show metadata in markers heatmap tooltip.
• Added search to cell type selectors.
• Reset on apply by default in Annotate tab.

0.2.39

MCView 0.2.39

• Added log2 option to the scatter plots.
• Fix: 'Stroke' was not working in the 2D projection plots.

MCView 0.2.38

• Show GeneCards buttons also when Show-Correlations is off.

0.2.36

MCView 0.2.36

• Fix: Metadata/Gene correlations were not shown.

MCView 0.2.35

• Changed default of 'Show correlations' to FALSE.

0.2.34

MCView 0.2.34

• Added an option to view corrected gene expression in the 'Genes' tab (discussion #170).
• Added cell type selectors to the 'Annotate' tab.
• Turn off the correlations on the 'Genes' tab by default when selecting a subset of the cell types.