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@survival-lumc

Survival Analysis Group LUMC

A Github site for projects from the Survival Analysis Group at Leiden University Medical Center (LUMC, the Netherlands).

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  1. ValidationCompRisks ValidationCompRisks Public

    Code repository for the manuscript 'Validation of the performance of competing risks prediction models: a guide through modern methods' (2023, BMJ)

    R 31 12

  2. FrailtyTutorial FrailtyTutorial Public

    R-code and output of all analyses in Balan & Putter (2020): A tutorial in frailty models, Statistical Methods in Medical Research, vol. 29(11), 3424-3454, https://journals.sagepub.com/doi/full/10.1…

    HTML 8

  3. Landmarking2.0 Landmarking2.0 Public

    Code for the paper "Landmarking 2.0: Bridging the gap between joint models and landmarking" by Hein Putter & Hans van Houwelingen

    9 2

  4. Validation_Under_Interventions Validation_Under_Interventions Public

    Performance evaluation of predictions under interventions using longitudinal observational data

    R 5 3

  5. DynamicPrediction-book DynamicPrediction-book Public

    Code and datasets used in book "Dynamic Prediction in Clinical Survival Analysis" by Hans van Houwelingen and Hein Putter (2011)

    R 9

  6. FineGrayCovarMI FineGrayCovarMI Public

    Code repository for the manuscript 'Multiple imputation of missing covariates when using the Fine–Gray model' (2025, Statistics in Medicine)

    R 3

Repositories

Showing 10 of 22 repositories
  • AdvancedSurvival-course Public

    Landing site for course "Advanced Survival Analysis", given in Leiden (the Netherlands).

    survival-lumc/AdvancedSurvival-course’s past year of commit activity
    CSS 0 0 0 0 Updated Feb 13, 2026
  • ValidationCompRisks Public

    Code repository for the manuscript 'Validation of the performance of competing risks prediction models: a guide through modern methods' (2023, BMJ)

    survival-lumc/ValidationCompRisks’s past year of commit activity
    R 31 GPL-3.0 12 0 0 Updated Jan 5, 2026
  • COVID19_ExcessMortality Public

    R code for the paper "Dynamics of infection, vaccination and excess mortality during the COVID-19 pandemic among older individuals - a nationwide analysis", by Eva Koster, Marije Sluiskes, Hein Putter, Frits Rosendaal, Astrid van Hylckama Vlieg, Mark de Boer and Liesbeth de Wreede

    survival-lumc/COVID19_ExcessMortality’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated Nov 20, 2025
  • Proportional_hazards_additive_hazards_AFT_models Public

    An illustration of proportional hazards, additive hazards and accelerated failure time models

    survival-lumc/Proportional_hazards_additive_hazards_AFT_models’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Nov 14, 2025
  • HLA-DP_IP-divergence_score Public

    R code for the HLA-DPB1 immunopeptidome mismatch scores

    survival-lumc/HLA-DP_IP-divergence_score’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Aug 18, 2025
  • CauseSpecCovarMI Public

    Code and supplementary materials for the manuscript "Multiple imputation for cause-specific Cox models: assessing methods for estimation and prediction" (2022, Statistical Methods in Medical Research)

    survival-lumc/CauseSpecCovarMI’s past year of commit activity
    R 3 GPL-3.0 0 0 0 Updated Aug 13, 2025
  • ImmuneReconstJM Public

    Code and supplementary materials for the manuscript "Joint models quantify associations between T-cell kinetics and allo-immunological events after allogeneic stem cell transplantation and subsequent donor lymphocyte infusion" (2023, Frontiers in Immunology)

    survival-lumc/ImmuneReconstJM’s past year of commit activity
    TeX 2 GPL-3.0 0 0 0 Updated Aug 13, 2025
  • ReviewHaemaMissing Public

    Code and supplementary materials for the manuscript "Handling missing covariate data in clinical studies in haematology" (2023, Best Practice & Research Clinical Haematology)

    survival-lumc/ReviewHaemaMissing’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Aug 13, 2025
  • FineGrayDGM Public

    Code accompanying the manuscript "Why you should avoid using multiple Fine–Gray models: insights from (attempts at) simulating proportional subdistribution hazards data" (2024, JRSS-A)

    survival-lumc/FineGrayDGM’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Aug 13, 2025
  • FineGrayCovarMI Public

    Code repository for the manuscript 'Multiple imputation of missing covariates when using the Fine–Gray model' (2025, Statistics in Medicine)

    survival-lumc/FineGrayCovarMI’s past year of commit activity
    R 3 GPL-3.0 0 0 0 Updated Aug 13, 2025
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