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Releases: starsareintherose/TNT_Script

0.1.9

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@starsareintherose starsareintherose released this 06 Sep 14:59

guoyi.run

  • add: MPTs CI RI TL; auto select K using K=0 for eiw and iw

  • fix: arg2 missing error

0.1.8

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@starsareintherose starsareintherose released this 27 Jul 03:47

guoyi.run

  • fix: Bremer and relative Bremer do collapse branches

  • add: parallel ability in Linux and macOS

0.1.7

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@starsareintherose starsareintherose released this 27 May 00:49

guoyi.run

  • polish: change based on Pablo Goloboff's review comments

  • add: citation and cover

0.1.6

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@starsareintherose starsareintherose released this 05 Apr 07:06

guoyi.run

  • polish: just add warn to polytomy

0.1.5

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@starsareintherose starsareintherose released this 05 Apr 06:00

guoyi.run

  • fix: bremer-related calculation for polytomy

0.1.4

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@starsareintherose starsareintherose released this 05 Apr 04:37

guoyi.run

  • add: original svg file

  • fix: bremer-related topology

0.1.3

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@starsareintherose starsareintherose released this 01 Mar 12:56

guoyi.run

  • polish: handle cases where the denominator is zero.

0.1.2

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@starsareintherose starsareintherose released this 15 Jan 12:56

tnt2figtree

  • add: tnt2figtree which can convert the tree(s) generated by export from TNT to the nexus format (FigTree compatible) tree(s).

0.1.1

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@starsareintherose starsareintherose released this 11 Oct 14:29

guoyi.run

  • add: branch swapping after new tech search

0.1.0

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@starsareintherose starsareintherose released this 10 Oct 15:30

guoyi.run

  • add: relative Bremer support

  • add: fasta nexus input function

  • add: generate winclada.ss file which can be read by winclada directly

  • add: use tree vault to save consensus tree during operation

  • polish: argument processing function

  • polish: Bremer-related can be generated faster via TBR

  • polish: sub should be re-adjusted to zero before resample

  • polish: resample count change, now rbrs 0.1 brs 0.2 jak 1 boot 2 sym 4.

  • polish: errmsg repeat is solved via goto

  • fix: OR expression

  • fix: search warning

  • fix: ntax is the number of taxa minus one, now change to the right number

  • orphan: considering the winclada.ss can be read by winclada and it contains a tree and matrix, therefore, tnt2winclada is orphaned now from version 0.1.0.