OmniPath Next

A Next.js application providing a web interface and API for querying the OmniPath molecular interaction database.

Overview

OmniPath is a comprehensive collection of molecular biology interactions, pathways, and annotations. This application provides:

Web Interface
MCP API: A Model Context Protocol (MCP) endpoint (src/app/api/[transport]/route.ts) that enables AI assistants to query the database directly

The application provides read-only SQL query access to multiple biological data tables including:

Name		Name	Last commit message	Last commit date
Latest commit History 450 Commits
db_build		db_build
public		public
scripts		scripts
src		src
.dockerignore		.dockerignore
.gitignore		.gitignore
Dockerfile		Dockerfile
FILTER_URL_SYNC_REFACTORING_PLAN.md		FILTER_URL_SYNC_REFACTORING_PLAN.md
Makefile		Makefile
OMNIPATH_VISUALIZATION_UPDATE.md		OMNIPATH_VISUALIZATION_UPDATE.md
README.md		README.md
complexes-browser-implementation-plan.md		complexes-browser-implementation-plan.md
components.json		components.json
docker-compose.yaml		docker-compose.yaml
drizzle.config.ts		drizzle.config.ts
enzsub-browser-implementation-plan.md		enzsub-browser-implementation-plan.md
eslint.config.mjs		eslint.config.mjs
next.config.ts		next.config.ts
package-lock.json		package-lock.json
package.json		package.json
pnpm-lock.yaml		pnpm-lock.yaml
postcss.config.mjs		postcss.config.mjs
sidebar-implementation-plan.md		sidebar-implementation-plan.md
tsconfig.json		tsconfig.json
vercel.json		vercel.json