Assembly Comparisons

This repo provides scripts to compare the output reports produced for the same samples by different methods (Illumina vs ONT).

The repo is used for the following papers:

• https://www.biorxiv.org/content/10.64898/2026.02.04.703726v1
• https://www.biorxiv.org/content/10.64898/2026.04.08.717216v1

Install

conda env create -f env.yml && conda activate compare

Programs

For comparing folders of output results use:

compare --help

For plotting the differences use:

graph --help

The papers walk through how this repo gets used.