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@zhangqf-lab Zhang Lab @Tsinghua University, School of Life Sciences

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    Repositories list

    18 repositories

    • SIREN

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2026Oct 13, 2026

    • CCI-seq

      Public
      CCI-seq
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Oct 7, 2026Oct 7, 2026

    • CryoNet.Discovery

      Public
      Identification protein structures from cryo-EM density maps across resolutions through cross-modal recognition
      Python
      •2•3•0•0•Updated Aug 4, 2026Aug 4, 2026

    • TISCOPE

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 6, 2026Jan 6, 2026

    • SPACE

      Public
      Jupyter Notebook
      •
      MIT License
      •4•9•1•0•Updated Sep 13, 2024Sep 13, 2024

    • PrismNetWeb

      Public
      0•0•0•0•Updated Jan 27, 2023Jan 27, 2023

    • CryoRes

      Public
      0•0•0•0•Updated Oct 11, 2022Oct 11, 2022

    • VRmol

      Public
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Feb 26, 2022Feb 26, 2022

    • PrismNet

      Public
      Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
      Python
      •
      MIT License
      •0•5•0•0•Updated Feb 26, 2022Feb 26, 2022

    • ZIKV-RNA-Structure

      Public
      Scripts for ZIKV RNA structure analysis
      Python
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • smartSHAPE

      Public
      Scripts for SMART-SHAPE analysis
      Python
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • SARS-CoV-2

      Public
      Scripts for SARS-CoV-2 RNA structure analysis
      Python
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • RNA_Structure_Dynamics

      Public
      Scripts for RNA Structure Dynamics Analysis
      Python
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • RIP-icSHAPE-MaP

      Public
      Scripts for RIP-icSHAPE-MaP analysis
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • RASP

      Public
      RASP (RNA Alatas of Structure Probing) is a transcriptome-scale RNA structure probing database.
      JavaScript
      •1•0•0•0•Updated Feb 20, 2022Feb 20, 2022

    • icSHAPE-pipe

      Public
      icSHAPE-pipe is a pipeline to calculate icSHAPE score in genome with sliding window strategy.
      C++
      •1•3•0•0•Updated Feb 20, 2022Feb 20, 2022

    • SCALE

      Public
      Single-cell ATAC-seq analysis via Latent feature Extraction
      Python
      •
      MIT License
      •1•2•0•0•Updated Feb 20, 2022Feb 20, 2022

    • awesome-cryoem

      Public
      A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
      Creative Commons Zero v1.0 Universal
      •35•0•0•0•Updated Jan 25, 2021Jan 25, 2021
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