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    • A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
      Java
      MIT License
      9000Updated Apr 27, 2026Apr 27, 2026
    • Provides utilities to access the TOPMed Imputation Server programmatically.
      Python
      0010Updated Apr 27, 2026Apr 27, 2026
    • pheweb

      Public
      A tool to build a website to browse hundreds or thousands of GWAS.
      Python
      MIT License
      75197381Updated Apr 22, 2026Apr 22, 2026
    • bravo_vue

      Public
      BRAVO's Vue JS based UI.
      Vue
      001319Updated Apr 15, 2026Apr 15, 2026
    • savvy

      Public
      Interface to various variant calling formats.
      C++
      Mozilla Public License 2.0
      73191Updated Apr 10, 2026Apr 10, 2026
    • Imputation Server 2 workflow to facilitate genotype imputation at scale.
      Nextflow
      MIT License
      15000Updated Mar 27, 2026Mar 27, 2026
    • fipip

      Public
      Python
      Apache License 2.0
      0000Updated Mar 25, 2026Mar 25, 2026
    • bravo_api

      Public
      Server side data processing and retrieval endpoints for BRAVO
      Python
      MIT License
      21160Updated Mar 4, 2026Mar 4, 2026
    • Java
      MIT License
      4000Updated Feb 27, 2026Feb 27, 2026
    • JavaScript
      0000Updated Feb 2, 2026Feb 2, 2026
    • Anisble deployment roles and playbook for BRAVO API and UI
      Jinja
      1010Updated Jan 16, 2026Jan 16, 2026
    • Work flows and tools to create data that backs the BRAVO API.
      C++
      MIT License
      2080Updated Jan 5, 2026Jan 5, 2026
    • colocus

      Public
      A browser for display of fine-mapped genetic signals and their colocalizations
      Python
      MIT License
      0000Updated Dec 11, 2025Dec 11, 2025
    • User-facing documentation for the TOPMed Imputation Server v2 (Nextflow edition)
      0000Updated Nov 25, 2025Nov 25, 2025
    • Manuscript source files to reproduce fiPIP manuscript display items
      Jupyter Notebook
      0000Updated Nov 24, 2025Nov 24, 2025
    • encore

      Public
      Encore Analysis Server
      Python
      GNU Affero General Public License v3.0
      61305Updated Nov 18, 2025Nov 18, 2025
    • TOPMED Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and produc…
      Java
      GNU Affero General Public License v3.0
      49600Updated Oct 20, 2025Oct 20, 2025
    • PIpeline for TOPMed methylation QTL analysis.
      Python
      MIT License
      0000Updated Oct 11, 2025Oct 11, 2025
    • savant

      Public
      Sparse Allele Vector AssociatioN Tool
      C++
      Mozilla Public License 2.0
      0000Updated Oct 11, 2025Oct 11, 2025
    • Provisioning and deployment of example BRAVO vignette.
      HCL
      0010Updated Aug 26, 2025Aug 26, 2025
    • Tracks TOPMed OMICS qc progress
      PHP
      0100Updated Jul 10, 2025Jul 10, 2025
    • Flask server code for LocusZoom APIs
      Python
      MIT License
      3100Updated Jul 7, 2025Jul 7, 2025
    • Minimac4

      Public
      C++
      GNU General Public License v3.0
      2678512Updated Jun 4, 2025Jun 4, 2025
    • locuszoom

      Public
      A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
      JavaScript
      MIT License
      31166154Updated May 9, 2025May 9, 2025
    • localzoom

      Public
      Make interactive LocusZoom plots from a local GWAS file
      Vue
      MIT License
      51009Updated May 9, 2025May 9, 2025
    • A web service to upload and share GWAS results with LocusZoom.js
      Python
      MIT License
      011311Updated May 8, 2025May 8, 2025
    • zorp

      Public
      A simple GWAS parser + CLI
      Python
      MIT License
      0120Updated May 7, 2025May 7, 2025
    • Python
      MIT License
      0000Updated May 6, 2025May 6, 2025
    • LDServer

      Public
      Fast API server for calculating linkage disequilibrium
      Linker Script
      GNU General Public License v3.0
      22034Updated Apr 24, 2025Apr 24, 2025
    • ruth

      Public
      Robust Unified Hardy-Weinberg Equilibrium Test
      C++
      Apache License 2.0
      2770Updated Apr 8, 2025Apr 8, 2025
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