Repositories list

• postman-cli

  Public
  A client software for dataset request and download from openBIS

  otherhacktoberfest

  Java

  •

  MIT License

  •1•2•1•1•Updated Dec 19, 2025Dec 19, 2025

• xml-manager-lib

  Public
  Reading and writing of specific openBIS xml properties

  Java

  •

  MIT License

  •0•0•0•3•Updated Dec 19, 2025Dec 19, 2025

• sample-tracking-update-portlet

  Public
  [Not Maintained] Portlet to update sample status, location and general information

  CSS

  •

  MIT License

  •0•1•1•11•Updated Dec 19, 2025Dec 19, 2025

• barcode-dragon-portlet

  Public
  portlet

  CSS

  •

  MIT License

  •0•1•4•3•Updated Dec 19, 2025Dec 19, 2025

• data-model-lib

  Public
  Libraries providing functionality for the QBiC/openBIS data model

  hacktoberfest

  Groovy

  •

  MIT License

  •4•4•6•7•Updated Dec 19, 2025Dec 19, 2025

• linksmith

  Public
  A Java library to craft HTTP web links from raw header data.

  httphttp-headerweb-link+ 1rfc8288

  Java

  •

  GNU Affero General Public License v3.0

  •0•0•0•10•Updated Dec 19, 2025Dec 19, 2025

• compass

  Public
  A Java library to validate FAIR signposting profiles of web links.

  Groovy

  •

  GNU Affero General Public License v3.0

  •0•0•0•10•Updated Dec 18, 2025Dec 18, 2025

• data-manager-app

  Public
  A web-based life science omics and future imaging data management solution

  hacktoberfestlife-sciencesdata-management-platform+ 2data-stewardshipreasearch-data-management

  Java

  •

  GNU Affero General Public License v3.0

  •1•12•122•16•Updated Dec 17, 2025Dec 17, 2025

• etl-scripts

  Public
  ETL scripts written in Jython 2.7 for openBIS dropboxes.

  otherhacktoberfestqbic+ 3openbisopenbis-dropboxesetl-scripts

  Python

  •

  MIT License

  •3•6•12•0•Updated Dec 10, 2025Dec 10, 2025

• offer-manager-2-portlet

  Public
  The offer manager assists in creating offers with version control and person master data handling.

  hacktoberfest

  Groovy

  •

  MIT License

  •1•2•35•6•Updated Dec 5, 2025Dec 5, 2025

• auto-mount-on-login

  Public
  Scripts to automatically mount an SMB share when logging in on MacOS

  Shell

  •

  MIT License

  •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

• metadata-doc

  Public
  Collection of metadata sheets for QBiC projects

  0•2•0•0•Updated Nov 12, 2025Nov 12, 2025

• openbis20-java-dropboxes

  Public
  ETL procedures written in Java for data registration in openBIS version 20

  Java

  •

  MIT License

  •0•0•0•5•Updated Oct 13, 2025Oct 13, 2025

• data-download-server

  Public
  Java

  •

  MIT License

  •0•0•3•10•Updated Oct 13, 2025Oct 13, 2025

• research-data-management

  Public
  Documentation about the life science research data management at QBiC

  metadatadocumentationdata+ 7managementdata-managementrdmhacktoberfestdata-stewardshipreasearch-data-managementlife-science

  MIT License

  •0•1•4•0•Updated Oct 10, 2025Oct 10, 2025

• dropboxhandler

  Public
  other

  Python

  •

  MIT License

  •1•0•0•1•Updated Sep 8, 2025Sep 8, 2025

• ncct-style

  Public
  HTML

  •

  MIT License

  •0•0•2•1•Updated Apr 11, 2025Apr 11, 2025

• openbis20-scripts

  Public
  Java

  •

  MIT License

  •1•1•0•1•Updated Oct 31, 2024Oct 31, 2024

• core-utils-lib

  Public
  Library containing core classes and utilities that are independent of a portal.

  hacktoberfest

  Groovy

  •

  MIT License

  •0•0•5•4•Updated Oct 24, 2024Oct 24, 2024

• groovydoc-maven-plugin

  Public
  Maven plugin to allow for inclusion of Gmavenplus generated Groovydocs in project-reports.html

  hacktoberfest

  Java

  •

  MIT License

  •0•0•0•1•Updated Oct 17, 2024Oct 17, 2024

• projectwizard-portlet

  Public
  QBiC Project Wizard enables users to create hierarchical experiments including different study conditions using factorial design.

  hacktoberfest

  Java

  •

  MIT License

  •1•1•3•6•Updated Oct 3, 2024Oct 3, 2024

• fairy

  Public
  HTML

  •

  MIT License

  •0•3•0•0•Updated Sep 18, 2024Sep 18, 2024

• data-scanner

  Public
  QBiC's post-upload server-side logic to prepare datasets for registration

  Java

  •

  MIT License

  •0•0•8•0•Updated Jul 30, 2024Jul 30, 2024

• scark-cli

  Public
  benchmarkscalaspark

  Scala

  •1•0•6•29•Updated May 8, 2024May 8, 2024

• QMSFC

  Public
  Data and code for the `Multiomics surface receptor profiling of the NCI-60 tumor cell panel uncovers novel theranostics for cancer immunotherapy` paper.

  R

  •

  MIT License

  •2•2•0•0•Updated Apr 25, 2024Apr 25, 2024

• ome-xml-editor

  Public
  Java

  •

  MIT License

  •0•1•1•1•Updated Apr 15, 2024Apr 15, 2024

• dm-onthology-terms

  Public
  Loading onthology terms from OWL notations into ORM databases

  Java

  •

  MIT License

  •0•0•0•1•Updated Apr 9, 2024Apr 9, 2024

• variantstore-service

  Public
  The Variantstore is a Java/Groovy-based service application implemented using the Micronaut framework and enables storage and access to information on genomic variants and metadata from a connected database via a RESTful API.

  genomicsservicevariants+ 3hacktoberfestoncologymicronaut

  Groovy

  •

  MIT License

  •1•4•1•2•Updated Feb 21, 2024Feb 21, 2024

• CRISPR-Cas9_regorafenib_2024

  Public
  R

  •0•0•0•0•Updated Feb 5, 2024Feb 5, 2024

• user-db-portlet

  Public
  User DB Tools Portlet enables users to add people and affiliations to the SQL user database.

  CSS

  •

  MIT License

  •1•1•10•0•Updated Jan 29, 2024Jan 29, 2024