Skip to content

@learn-bioinformatics learn-bioinformatics

All

    Repositories list

    26 repositories

    • various_R_scripts

      Public
      R
      •0•0•0•0•Updated Sep 20, 2025Sep 20, 2025

    • R_quantile_names

      Public
      R
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • MutantHuntWGS

      Public
      Bioinformatics pipeline for identification and characterization of mutations in Saccharomyces cerevisiae
      Shell
      •4•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • sci-rocket

      Public
      Snakemake workflow for (pre-)processing sci-RNA-seq3 data
      Python
      •
      MIT License
      •5•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • seurat-fix-parquet

      Public
      R toolkit for single cell genomics
      R
      •
      Other
      •997•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • SpaNN-OMRF-dev

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 30, 2023Nov 30, 2023

    • DeepLabCut

      Public
      Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
      Python
      •
      GNU Lesser General Public License v3.0
      •1.8k•0•0•0•Updated May 23, 2023May 23, 2023

    • cli

      Public
      Python framework for command line applications
      Python
      •14•0•0•0•Updated Apr 21, 2023Apr 21, 2023

    • seurat

      Public
      R toolkit for single cell genomics
      R
      •
      Other
      •997•0•0•0•Updated Dec 9, 2022Dec 9, 2022

    • cellenics-pipeline

      Public
      The Cellenics pipeline project for dependency-managed work processing.
      R
      •
      Other
      •4•0•0•0•Updated Dec 8, 2022Dec 8, 2022

    • why_use_github

      Public
      Powerpoint and resources for Why Use GitHub for Research talk
      HTML
      •0•2•0•0•Updated Nov 4, 2022Nov 4, 2022

    • single-cell-repository

      Public
      R
      •
      MIT License
      •4•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • SeeSpotRun

      Public
      :star: Here we present the pipeline used for analyzing the motion of fluorescently-tagged chromosomal loci. This repository provides the materials required to g…
      Jupyter Notebook
      •2•0•0•0•Updated Sep 21, 2022Sep 21, 2022

    • genomicscalss_PH525x_labs

      Public
      Rmd source files for the HarvardX series PH525x
      R
      •
      MIT License
      •2k•0•0•0•Updated Jul 10, 2022Jul 10, 2022

    • PeacoQC

      Public
      Peak-based selection of high quality cytometry data
      R
      •12•0•0•0•Updated Jun 22, 2022Jun 22, 2022

    • ids2names

      Public
      R
      •
      Other
      •0•0•0•0•Updated Jun 17, 2022Jun 17, 2022

    • get_started_with_hpc

      Public
      Powerpoint and Resources for Getting Started with the HPC workshop
      HTML
      •0•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • get_hmdb_name

      Public
      Given a file containing a list of metabolites return given list with the HMDB IDs
      Shell
      •0•0•0•0•Updated May 25, 2022May 25, 2022

    • example-project

      Public
      How to make a repo on GitHub!
      0•0•0•0•Updated May 5, 2022May 5, 2022

    • crazy_R

      Public
      Cool R tricks that you probably shouldn't use unless you have a very good reason and really know what you are doing
      R
      •0•1•0•0•Updated Apr 15, 2022Apr 15, 2022

    • parallel-examples

      Public
      parallel bash examples
      bashscriptingparallel
      bashscriptingparallel
      Shell
      •0•0•0•0•Updated Apr 13, 2022Apr 13, 2022

    • SPLINTR_preprocessing

      Public
      Scripts to pre-process SPLINTR barcoding libraries as performed in Fennell & Vassiliadis et al. Nature 2021
      HTML
      •
      MIT License
      •1•0•0•0•Updated Mar 10, 2022Mar 10, 2022

    • vdjtools

      Public
      Post-analysis of immune repertoire sequencing data
      Groovy
      •
      Other
      •42•0•0•0•Updated Mar 9, 2022Mar 9, 2022

    • BiocWorkshops

      Public
      :warning: 2018 :warning: Bioconductor Workshops
      TeX
      •51•0•0•0•Updated May 15, 2019May 15, 2019

    • vim-cheatsheet

      Public
      📟 My personal vim cheatsheet
      196•0•0•0•Updated Sep 5, 2018Sep 5, 2018

    • pycli

      Public
      A Tiny Python CLI Library Based On argparse
      Python
      •2•0•0•0•Updated Jul 30, 2018Jul 30, 2018
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.