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    • MAG-E

      Public
      Python
      Other
      1110Updated Apr 14, 2026Apr 14, 2026
    • Code, data, and data descriptions associated with the MAG-E manuscript.
      Python
      Other
      0000Updated Apr 14, 2026Apr 14, 2026
    • DEBIAS-M

      Public
      Python
      Other
      1300Updated Mar 12, 2026Mar 12, 2026
    • Jupyter Notebook
      0000Updated Feb 23, 2026Feb 23, 2026
    • Python
      0000Updated Feb 22, 2026Feb 22, 2026
    • Python
      BSD 3-Clause "New" or "Revised" License
      0502Updated Feb 17, 2026Feb 17, 2026
    • Results and code used to generate figures supporting "A generalizable cross-continent prediction of esophageal squamous cell carcinoma using the oral microbiome…
      Python
      0000Updated Feb 3, 2026Feb 3, 2026
    • Comparative pan-metagenomic graph.
      Shell
      Other
      0700Updated Nov 27, 2025Nov 27, 2025
    • Python
      Other
      0100Updated Nov 27, 2025Nov 27, 2025
    • Jupyter Notebook
      0000Updated Oct 20, 2025Oct 20, 2025
    • Python
      Other
      47141Updated Oct 3, 2025Oct 3, 2025
    • SLICE

      Public
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Oct 3, 2025Oct 3, 2025
    • Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Oct 1, 2025Oct 1, 2025
    • Analysis supporting the manuscript "Distributional bias compromises leave-one-out cross-validation"
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      0100Updated Sep 16, 2025Sep 16, 2025
    • Analysis of our manuscript entitled "Compositional transformations can reasonably introduce phenotype-associated values in sparse features"
      Jupyter Notebook
      0000Updated Jan 6, 2025Jan 6, 2025
    • Analysis supporting the manuscript "Early prediction of preeclampsia using the first trimester vaginal microbiome"
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Dec 22, 2024Dec 22, 2024
    • pymgpipe

      Public
      Python implementation of mgpipe
      JetBrains MPS
      Apache License 2.0
      1701Updated Oct 9, 2023Oct 9, 2023
    • Python
      1000Updated Sep 11, 2023Sep 11, 2023
    • Jupyter Notebook
      1200Updated Jul 15, 2023Jul 15, 2023
    • mantis

      Public
      Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
      C++
      BSD 3-Clause "New" or "Revised" License
      22000Updated Apr 13, 2020Apr 13, 2020
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