HuBMAP Consortium
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192 repositories
ingest-pipeline
PublicData ingest pipeline(s) for QA/metadata etl/post-processing- This repository stores all the next-generation dataset metadata specification produced by the Data Coordination Working Group (DCWG). Every distinct folder corr…
ingest-validation-tests
Publicspatialdata-io
Publicingest-api
PublicHuBMAP Data Ingest APIentity-api
PublicA set of web service calls to return information about HuBMAP entitieshra-registrations
PublicManually curated HRA Dataset Graphsgeomx-pipeline
Publicdocumentation
PublicGeneral Documentation For HuBMAPhra-ui
PublicHRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)ingest-validation-tools
Publicuser_workspaces_server
Publichra-kg
PublicHuman Reference Atlas Knowledge Graphaws-api-gateway
PublicAPI definitions, Lambda functions/authorizers/layer, and documentations to work with AWS API Gatewaygateway
Publicingest-ui
PublicHuBMAP Data Ingest Portal- Pipeline for unified processing of joint RNA-seq and ATAC-seq measurements for single cells
phenocycler-pipeline
PublicPhenoCycler segmentation pipelinesearch-api
PublicHuBMAP search service and associated pieces to create an indexsalmon-rnaseq
PublicscRNA-seq pipeline using Salmon for quantificationportal-ui
PublicHuBMAP Data Portal front endSectionAligner
Publichra-do-processor
Publichra-do-processor: HRA Digital Objects Processorccf-validation-tools
PublicHRA ASCT+B Validation Reportsportal-containers
PublicDocker containers to pre-process data for visualization in the portaluser-templates-api
Publiccommons
PublicThe common code supporting the HuBMAP web serviceshra-workflows-runner
Publichra-workflows-runner: DCTA pipeline to download, annotate, and summarize experimental data using hra-workflows
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