Repositories list

• not2code

  Public
  lnc annotation pipeline

  C++

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• dalmolingroup.github.io

  Public
  Dalmolin Group's website

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •55 forks•00 stars•11 issue•00 pull requests•Updated Apr 4, 2026Apr 4, 2026

• rnaseq_pathogen

  Public
  TeX

  •

  Creative Commons Attribution Share Alike 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026

• metastasisevolution

  Public
  Reconstruction of the Evolutionary Landscape of Biological Processes Involved in the Early Stages of the Metastatic Cascade

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026

• basics_rnaseq_minicourse

  Public
  Este repositório comporta a apresentação teórica e os scripts práticos do minicurso básico sobre expressão diferencial

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• orthoguide

  Public
  A web application for evolutionary rooting of genes

  bioinformaticsevolutionrooting+ 1

  bioinformaticsevolutionrootingorthology

  Vue

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 25, 2026Feb 25, 2026

• neurotransmissionevolution

  Public
  Research compendium for Viscardi et al, 2020.

  bioinformaticsrevolution+ 8

  bioinformaticsrevolutionnetwork-analysiskeggigraphorthologyexpression-atlasresearch-compendiumstringdb+ 1

  TeX

  •22 forks•55 stars•00 issues•11 pull request•Updated Feb 20, 2026Feb 20, 2026

• brand

  Public
  YAML da marca Dalmolin Group + logotipos

  logosbrandingbrandyml

  logosbrandingbrandyml

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 21, 2025Dec 21, 2025

• mare

  Public
  Resultados e scripts utilizados no projeto MaRe

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 5, 2025Dec 5, 2025

• tcruzi_strains_dge

  Public
  Bioinformatics pipeline for comparing the gene expression profiles of two Trypanosoma cruzi strains

  trypanosomedifferential-gene-expressionstrain+ 1

  trypanosomedifferential-gene-expressionstrainchagas-disease

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• genebridge-course

  Public
  GeneBridge: Inferring the Evolutionary Rooting of Orthologous Genes

  systems-biologyrootingevolutionary-biology

  systems-biologyrootingevolutionary-biology

  TeX

  •

  Creative Commons Attribution Share Alike 4.0 International

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 5, 2025Nov 5, 2025

• cochineal_16s

  Public
  Analysis of 16S data on the cochineal insect

  metagenomics16scochineal+ 1

  metagenomics16scochinealmetataxonomics

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 15, 2025Sep 15, 2025

• ccRCC_MRs_aggressive

  Public
  Scripts used in the analyzes of the paper titled "Clear Cell Renal Cell Carcinoma Regulatory Network Reveals Master Regulators Associated with Tumor Aggressiven…

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 1, 2025Aug 1, 2025

• mare-methods

  Public
  MaRe (Metagenômica de Mangue e Restinga)

  documentationresearchmetagenomics+ 4

  documentationresearchmetagenomicsmicrobiomeecologymanguerestinga

  11 fork•00 stars•00 issues•00 pull requests•Updated Jun 13, 2025Jun 13, 2025

• euryale

  Public
  A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA

  bioinformaticssnakemakepipeline+ 6

  bioinformaticssnakemakepipelinenextflowdiamondmetagenomicsfunctional-annotationkaijutaxonomic-classification

  Nextflow

  •

  MIT License

  •00 forks•1414 stars•22 issues•00 pull requests•Updated Apr 16, 2025Apr 16, 2025

• systemsbiology-course

  Public
  Material para o curso Biologia de Sistemas, organizado pelo Prof. Rodrigo Dalmolin, do Centro Multiusuário de Bioinformática da UFRN.

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2025Mar 19, 2025

• introductionR-course

  Public
  Material para o curso Introdução ao R, organizado pelo Prof. Rodrigo Dalmolin, do Centro Multiusuário de Bioinformática da UFRN.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2025Mar 19, 2025

• metagenome-course

  Public
  Material para o curso Análise de dados de Metagenômica, organizado pelo Prof. Rodrigo Dalmolin, do Centro Multiusuário de Bioinformática da UFRN

  coursemetagenomicscoursework+ 3

  coursemetagenomicscourseworkmicrobiomemicrobiome-analysisshotgun-metagenomics

  00 forks•22 stars•00 issues•00 pull requests•Updated Mar 15, 2025Mar 15, 2025

• KEGG-Pathway-Viewer

  Public
  Tool to visualize KEGG networks

  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 11, 2025Feb 11, 2025

• r-course-dalmolin

  Public
  R programming course

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 10, 2025Feb 10, 2025

• curso-shell

  Public
  Curso de Introdução à Linha de Comando, ministrado como parte da Semana de Portas Abertas do PPg-Bioinfo

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2025Feb 10, 2025

• intro_deep-learning

  Public
  Jupyter Notebook

  •11 fork•44 stars•00 issues•00 pull requests•Updated Dec 5, 2024Dec 5, 2024

• easylayout

  Public
  interactive force-directed graph layouts within RStudio

  ggplot2bioinformaticsr+ 17

  ggplot2bioinformaticsrshinysveltedata-visualizationnetworkxbioconductorgraph-theorycytoscape+ 10

  JavaScript

  •

  Other

  •00 forks•44 stars•22 issues•00 pull requests•Updated Dec 3, 2024Dec 3, 2024

• MB_MRA

  Public
  R

  •11 fork•11 star•00 issues•00 pull requests•Updated Oct 1, 2024Oct 1, 2024

• bulkrna

  Public
  Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data

  bioinformaticspipelinenextflow+ 2

  bioinformaticspipelinenextflowexpressionbulk-rna-seq

  Groovy

  •

  MIT License

  •22 forks•88 stars•00 issues•00 pull requests•Updated Sep 30, 2024Sep 30, 2024

• MEDUSA

  Public
  Metagenomic pipeline managed by snakemake

  Python

  •

  GNU General Public License v3.0

  •33 forks•1818 stars•00 issues•00 pull requests•Updated Sep 18, 2024Sep 18, 2024

• mdd-paper

  Public
  Sex-specific transcriptional alteration profile of MDD

  R

  •11 fork•11 star•00 issues•00 pull requests•Updated Aug 16, 2024Aug 16, 2024

• .github

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 22, 2024Jun 22, 2024

• trastuzumab_dge

  Public
  What Powers Trastuzumab's Cardiotoxicity? Decoding Mitochondrial-Related Gene Expression Through Integrative Review and Meta-Analysis in Cardiomyocytes

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated May 27, 2024May 27, 2024

• intro-single-cell

  Public
  Introduction to single-cell RNA-seq analysis

  R

  •

  MIT License

  •22 forks•33 stars•00 issues•00 pull requests•Updated May 15, 2024May 15, 2024