AOML 'Omics
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46 repositories
ocean-dna-explorer
PublicFAIReSheets
Publicedna2obis
Publicprotocols
PublicProtocols used by AOML Omics labs, following the BeBOP-OBON standard- Protocol for preparing 12S V5-V6 (MiFish) amplicon libraries using MBARI protocol modified for SEAMAP
- Protocol for preparing 18S V4 (Stoeck-Piredda) amplicon libraries at Smithsonian NMNH
- Protocol for preparing COI (Leray-Geller) amplicon libraries at Smithsonian NMNH
- Protocol for extracting DNA using phenol-chloroform and isopropanol at Smithsonian NMNH
- Protocol for sampling water using Sterivex with Zymo ZR beads and DNA/RNA Shield
BeBOP_Template
Public templaterobots
PublicProtocols and labware specifications for the KingFisher Flex and Opentrons OT-2 robots- Protocol for sampling water using Sterivex with no ZR beads or preservative (dry)
tourmaline
Publiclabelmaker
PublicPrintable QR labels for samples- Protocol for preparing 16S V4-V5 (EMP) amplicon libraries for Michigan State RTSF
- Protocol for preparing metagenomic libraries using Illumina DNA Prep
- Protocol for preparing 18S V9 (EMP) amplicon libraries for Michigan State RTSF
- Protocol for extraction of DNA from Sterivex filters using a KingFisher robot (BeBOP format)
- Protocol for extracting DNA from sediment trap samples using the Qiagen PowerSoil Pro Kit
- Protocol for running the Tourmaline 2 amplicon sequence processing workflow on data from assay Eukarya-18S-V9-Lane-Medlin
FAIRe2QIIME
Publicgomecc
PublicInput files and data analysis for NOAA GOMECC-4 DNA project.mitohelper
PublicMitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studiesFAIRe2NCBI
Publicedna2obis-archive
Public archiveCode to convert eDNA metabarcoding data to Darwin Core for OBISFAIRe2ODE
Public archive
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