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Pull requests: nf-core/rnaseq

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Pull requests list

Important! Template update for nf-core/tools v4.1.0
#1914 opened Sep 1, 2026 by nf-core-bot Member Loading…
WIP: all hisat2 modules
#1913 opened Aug 31, 2026 by maxulysse Member Loading…
5
Supply the slack token within platform, instead of from github
#1906 opened Aug 18, 2026 by ewels Member Loading…
4
fix(trimgalore): allocate memory to match TRIMGALORE's cpu band
#1905 opened Aug 18, 2026 by FelixKrueger Contributor Loading…
2
Harden GitHub Actions workflows: least-privilege permissions and token isolation
#1904 opened Aug 18, 2026 by ewels Member • Draft
2 of 11 tasks
15
docs: Simplify as_tibble syntax in usage example
#1888 opened Jul 21, 2026 by kbseah Loading…
1 task done
docs(metro): add process mappings and re-render with nf-metro 1.0
#1876 opened Jun 26, 2026 by pinin4fjords Member Loading…
1
Consolidate and harden PR-comment GitHub Actions workflows
#1872 opened Jun 22, 2026 by ewels Member • Draft
2
test(rustqc): validate noodles-migration build via pinned dev container
#1868 opened Jun 16, 2026 by ewels Member • Draft
1
feat(rustar): wire rustar-aligner as opt-in STAR drop-in
#1855 opened May 12, 2026 by pinin4fjords Member • Draft
4 of 5 tasks
4
ProTip! Updated in the last three days: updated:>2026-08-31.