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msk-access / STRiDE Public

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Feature/package modernization#1

Merged

rhshah merged 13 commits into

developmsk-access/STRiDE:developfrom

feature/package-modernizationmsk-access/STRiDE:feature/package-modernizationCopy head branch name to clipboard

Feb 27, 2026

Conversation Commits13 (13)Checks Files changed

Merged

Feature/package modernization#1
rhshah merged 13 commits into
developfrom
feature/package-modernization

Commits

Commits on Feb 24, 2026

feat: package modernization — Typer CLI, Rich logging, tests, CI/CD, docs
rhshah
committed
chore: remove old data/ directory (contents moved to src/stride/data/)
rhshah
committed
docs: use AGPL-3.0 and py-gbcms snippet pointers
rhshah
committed
chore: repository cleanup — remove obsolete scripts and environment.yml
rhshah
committed
fix(ci): resolve ruff linting errors causing CI failure
rhshah
committed
fix(ci): resolve mypy type checking failures
rhshah
committed
test(cli): fix assertion failures due to ANSI color codes
rhshah
committed

Commits on Feb 26, 2026

Adding normal ids and MSI/NA label
rhshah
committed
feat(qc): v2.1 — multi-distance report with enriched Tabulator table
rhshah
committed

Commits on Feb 27, 2026

feat(qc): interactive HTML report with dashboard, site explorer, and data table
rhshah
committed
fix(ci): resolve NameError for go.Figure annotations and black formatting
rhshah
committed
fix(ci): resolve mypy errors for plotly imports and pandas type stubs
rhshah
committed
Add Nextflow DSL2 pipeline and docs
rhshah
committed

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