Currently the github repository is being editted for submission for Bioconductor. Some functions may be removed. Please download at https://zenodo.org/record/7559084 for the version that produces the same result for the Bioinformatics paper.
- In R console
if (!require("devtools", quietly = TRUE))
install.packages("devtools")
#install dependencies
devtools::install_github("diffCircadian/diffCircadian")
devtools::install_github("ricardo-bion/ggradar")
devtools::install_github("Caleb-Huo/differentialR2")
devtools::install_github("Caleb-Huo/AWFisher")
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")
#install DiffCircaPipeline
devtools::install_github("DiffCircaPipeline/DiffCircaPipeline")
# devtools::install_github("DiffCircaPipeline/DiffCircaPipeline@main") #run this if the above line does not work.
The tutorial can be found at https://diffcircapipeline.github.io.
differential rhythmicity (DR) differential phase (Δ∅), amplitude (ΔA), DR fitness (ΔR2, the coefficient of determination representing the proportion of variance explained by the circadian pattern),