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Add QPET-SPERR codec #33

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Merged
merged 11 commits into from
Nov 4, 2025
Merged

Add QPET-SPERR codec #33

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2153841
Draft qpet-sperr codec
juntyr Oct 30, 2025
eb6dbc3
small updates
juntyr Oct 31, 2025
2803b5b
small update
juntyr Nov 3, 2025
3c9ebaa
switch to published qpet-sperr dependency
juntyr Nov 3, 2025
6342e91
small cleanup
juntyr Nov 3, 2025
c5705e5
clean up numcodecs-python
juntyr Nov 3, 2025
36bc594
enable gmp-mpfr-sys/force-cross on wasm32
juntyr Nov 3, 2025
3cf62a7
some work on qpet-sperr-wasm build
juntyr Nov 4, 2025
036a050
Bump numcodecs-wasm to v0.2.2
juntyr Nov 4, 2025
1f9c783
small fixes
juntyr Nov 4, 2025
5fd2e81
remove numcodecs-qpet-sperr-py temp crate
juntyr Nov 4, 2025
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3 changes: 3 additions & 0 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -91,6 +91,7 @@ jobs:
cargo hack check --all \
--exclude numcodecs-python \
--exclude numcodecs-jpeg2000 \
--exclude numcodecs-qpet-sperr \
--exclude numcodecs-sperr \
--exclude numcodecs-sz3 \
--exclude numcodecs-tthresh \
Expand Down Expand Up @@ -224,6 +225,7 @@ jobs:
cargo hack clippy --all \
--exclude numcodecs-python \
--exclude numcodecs-jpeg2000 \
--exclude numcodecs-qpet-sperr \
--exclude numcodecs-sperr \
--exclude numcodecs-sz3 \
--exclude numcodecs-tthresh \
Expand All @@ -240,6 +242,7 @@ jobs:
cargo hack clippy --all \
--exclude numcodecs-python \
--exclude numcodecs-jpeg2000 \
--exclude numcodecs-qpet-sperr \
--exclude numcodecs-sperr \
--exclude numcodecs-sz3 \
--exclude numcodecs-tthresh \
Expand Down
9 changes: 6 additions & 3 deletions Cargo.toml
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Expand Up @@ -20,6 +20,7 @@ members = [
"codecs/linear-quantize",
"codecs/log",
"codecs/pco",
"codecs/qpet-sperr",
"codecs/random-projection",
"codecs/reinterpret",
"codecs/round",
Expand All @@ -45,14 +46,14 @@ rust-version = "1.87"
[workspace.dependencies]
# workspace-internal numcodecs crates
numcodecs = { version = "0.3", path = "crates/numcodecs", default-features = false }
numcodecs-python = { version = "0.7", path = "crates/numcodecs-python", default-features = false }
numcodecs-python = { version = "0.7.1", path = "crates/numcodecs-python", default-features = false }
numcodecs-wasm-builder = { version = "0.2", path = "crates/numcodecs-wasm-builder", default-features = false }
numcodecs-wasm-guest = { version = "0.3", path = "crates/numcodecs-wasm-guest", default-features = false }
numcodecs-wasm-host = { version = "0.2", path = "crates/numcodecs-wasm-host", default-features = false }
numcodecs-wasm-host-reproducible = { version = "0.2.1", path = "crates/numcodecs-wasm-host-reproducible", default-features = false }
numcodecs-wasm-logging = { version = "0.2", path = "crates/numcodecs-wasm-logging", default-features = false }

numcodecs-wasm = { version = "0.2.1", path = "py/numcodecs-wasm", default-features = false }
numcodecs-wasm = { version = "0.2.2", path = "py/numcodecs-wasm", default-features = false }

# workspace-internal codecs crates
numcodecs-asinh = { version = "0.4", path = "codecs/asinh", default-features = false }
Expand All @@ -64,6 +65,7 @@ numcodecs-jpeg2000 = { version = "0.3", path = "codecs/jpeg2000", default-featur
numcodecs-linear-quantize = { version = "0.5", path = "codecs/linear-quantize", default-features = false }
numcodecs-log = { version = "0.5", path = "codecs/log", default-features = false }
numcodecs-pco = { version = "0.3", path = "codecs/pco", default-features = false }
numcodecs-qpet-sperr = { version = "0.1", path = "codecs/qpet-sperr", default-features = false }
numcodecs-random-projection = { version = "0.4", path = "codecs/random-projection", default-features = false }
numcodecs-reinterpret = { version = "0.4", path = "codecs/reinterpret", default-features = false }
numcodecs-round = { version = "0.5", path = "codecs/round", default-features = false }
Expand All @@ -87,7 +89,6 @@ format_serde_error = { version = "0.3", default-features = false }
indexmap = { version = "2.10", default-features = false }
itertools = { version = "0.14", default-features = false }
log = { version = "0.4.27", default-features = false }
simple_logger = { version = "5.0", default-features = false }
miniz_oxide = { version = "0.8.5", default-features = false }
ndarray = { version = "0.16.1", default-features = false } # keep in sync with numpy
ndarray-rand = { version = "0.15", default-features = false }
Expand All @@ -102,6 +103,7 @@ pyo3 = { version = "0.26", default-features = false }
pyo3-error = { version = "0.6", default-features = false }
pyo3-log = { version = "0.13.0", default-features = false }
pythonize = { version = "0.26", default-features = false }
qpet-sperr = { version = "0.1", default-features = false }
rand = { version = "0.9.1", default-features = false }
schemars = { version = "1.0.3", default-features = false }
scratch = { version = "1.0", default-features = false }
Expand All @@ -110,6 +112,7 @@ serde = { version = "1.0.218", default-features = false }
serde-transcode = { version = "1.1", default-features = false }
serde_json = { version = "1.0.140", default-features = false }
serde_repr = { version = "0.1.3", default-features = false }
simple_logger = { version = "5.0", default-features = false }
sperr = { version = "0.2", default-features = false }
sz3 = { version = "0.3", default-features = false }
thiserror = { version = "2.0.12", default-features = false }
Expand Down
33 changes: 33 additions & 0 deletions codecs/qpet-sperr/Cargo.toml
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@@ -0,0 +1,33 @@
[package]
name = "numcodecs-qpet-sperr"
version = "0.1.0"
edition = { workspace = true }
authors = { workspace = true }
repository = { workspace = true }
license = { workspace = true }
rust-version = { workspace = true }

description = "QPET-SPERR codec implementation for the numcodecs API"
readme = "README.md"
categories = ["compression", "encoding"]
keywords = ["QPET-SPERR", "numcodecs", "compression", "encoding"]

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
ndarray = { workspace = true, features = ["std"] }
numcodecs = { workspace = true }
num-traits = { workspace = true, features = ["std"] }
postcard = { workspace = true }
qpet-sperr = { workspace = true }
schemars = { workspace = true, features = ["derive", "preserve_order"] }
serde = { workspace = true, features = ["std", "derive"] }
thiserror = { workspace = true }
# Explicitly enable the `no_wasm_shim` feature for qpet-sperr-sys/zstd-sys
zstd-sys = { workspace = true, features = ["no_wasm_shim"] }

[dev-dependencies]
serde_json = { workspace = true, features = ["std"] }

[lints]
workspace = true
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