Update pyo3 to v0.26, wasmtime to v37, and wasi to v0.2.6

.github/workflows/ci.yml

@@ -52,7 +52,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest]
-        rust: ["1.86", stable, nightly]
+        rust: ["1.87", stable, nightly]
         lock: ["Cargo.lock", "Cargo.lock.min"]
     runs-on: ${{ matrix.os }}
     needs: lock
@@ -174,7 +174,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest]
-        rust: ["1.86", stable]
+        rust: ["1.87", stable]
         lock: ["Cargo.lock", "Cargo.lock.min"]
     runs-on: ${{ matrix.os }}
     needs: lock

Cargo.toml

@@ -40,42 +40,43 @@ edition = "2024"
 authors = ["Juniper Tyree <[email protected]>"]
 repository = "https://github.com/juntyr/numcodecs-rs"
 license = "MPL-2.0"
-rust-version = "1.86"
+rust-version = "1.87"
 
 [workspace.dependencies]
 # workspace-internal numcodecs crates
-numcodecs = { version = "0.2.1", path = "crates/numcodecs", default-features = false }
-numcodecs-python = { version = "0.6", path = "crates/numcodecs-python", default-features = false }
-numcodecs-wasm-builder = { version = "0.1", path = "crates/numcodecs-wasm-builder", default-features = false }
-numcodecs-wasm-logging = { version = "0.1", path = "crates/numcodecs-wasm-logging", default-features = false }
-numcodecs-wasm-guest = { version = "0.2", path = "crates/numcodecs-wasm-guest", default-features = false }
-numcodecs-wasm-host = { version = "0.1", path = "crates/numcodecs-wasm-host", default-features = false }
-numcodecs-wasm-host-reproducible = { version = "0.1", path = "crates/numcodecs-wasm-host-reproducible", default-features = false }
+numcodecs = { version = "0.3", path = "crates/numcodecs", default-features = false }
+numcodecs-python = { version = "0.7", path = "crates/numcodecs-python", default-features = false }
+numcodecs-wasm-builder = { version = "0.2", path = "crates/numcodecs-wasm-builder", default-features = false }
+numcodecs-wasm-guest = { version = "0.3", path = "crates/numcodecs-wasm-guest", default-features = false }
+numcodecs-wasm-host = { version = "0.2", path = "crates/numcodecs-wasm-host", default-features = false }
+numcodecs-wasm-host-reproducible = { version = "0.2.1", path = "crates/numcodecs-wasm-host-reproducible", default-features = false }
+numcodecs-wasm-logging = { version = "0.2", path = "crates/numcodecs-wasm-logging", default-features = false }
 
-numcodecs-wasm = { version = "0.1", path = "py/numcodecs-wasm", default-features = false }
+numcodecs-wasm = { version = "0.2.1", path = "py/numcodecs-wasm", default-features = false }
 
 # workspace-internal codecs crates
-numcodecs-asinh = { version = "0.3", path = "codecs/asinh", default-features = false }
-numcodecs-bit-round = { version = "0.3", path = "codecs/bit-round", default-features = false }
-numcodecs-fixed-offset-scale = { version = "0.3", path = "codecs/fixed-offset-scale", default-features = false }
-numcodecs-fourier-network = { version = "0.2", path = "codecs/fourier-network", default-features = false }
-numcodecs-identity = { version = "0.3", path = "codecs/identity", default-features = false }
-numcodecs-jpeg2000 = { version = "0.2", path = "codecs/jpeg2000", default-features = false }
-numcodecs-linear-quantize = { version = "0.4", path = "codecs/linear-quantize", default-features = false }
-numcodecs-log = { version = "0.4", path = "codecs/log", default-features = false }
-numcodecs-pco = { version = "0.2", path = "codecs/pco", default-features = false }
-numcodecs-random-projection = { version = "0.3", path = "codecs/random-projection", default-features = false }
-numcodecs-reinterpret = { version = "0.3", path = "codecs/reinterpret", default-features = false }
-numcodecs-round = { version = "0.3", path = "codecs/round", default-features = false }
-numcodecs-stochastic-rounding = { version = "0.1", path = "codecs/stochastic-rounding", default-features = false }
-numcodecs-swizzle-reshape = { version = "0.3", path = "codecs/swizzle-reshape", default-features = false }
-numcodecs-sz3 = { version = "0.6", path = "codecs/sz3", default-features = false }
-numcodecs-tthresh = { version = "0.2", path = "codecs/tthresh", default-features = false }
-numcodecs-uniform-noise = { version = "0.3", path = "codecs/uniform-noise", default-features = false }
-numcodecs-zfp = { version = "0.5", path = "codecs/zfp", default-features = false }
-numcodecs-zfp-classic = { version = "0.3", path = "codecs/zfp-classic", default-features = false }
-numcodecs-zlib = { version = "0.3", path = "codecs/zlib", default-features = false }
-numcodecs-zstd = { version = "0.3", path = "codecs/zstd", default-features = false }
+numcodecs-asinh = { version = "0.4", path = "codecs/asinh", default-features = false }
+numcodecs-bit-round = { version = "0.4", path = "codecs/bit-round", default-features = false }
+numcodecs-fixed-offset-scale = { version = "0.4", path = "codecs/fixed-offset-scale", default-features = false }
+numcodecs-fourier-network = { version = "0.3", path = "codecs/fourier-network", default-features = false }
+numcodecs-identity = { version = "0.4", path = "codecs/identity", default-features = false }
+numcodecs-jpeg2000 = { version = "0.3", path = "codecs/jpeg2000", default-features = false }
+numcodecs-linear-quantize = { version = "0.5", path = "codecs/linear-quantize", default-features = false }
+numcodecs-log = { version = "0.5", path = "codecs/log", default-features = false }
+numcodecs-pco = { version = "0.3", path = "codecs/pco", default-features = false }
+numcodecs-random-projection = { version = "0.4", path = "codecs/random-projection", default-features = false }
+numcodecs-reinterpret = { version = "0.4", path = "codecs/reinterpret", default-features = false }
+numcodecs-round = { version = "0.5", path = "codecs/round", default-features = false }
+numcodecs-sperr = { version = "0.2", path = "codecs/sperr", default-features = false }
+numcodecs-stochastic-rounding = { version = "0.2", path = "codecs/stochastic-rounding", default-features = false }
+numcodecs-swizzle-reshape = { version = "0.4", path = "codecs/swizzle-reshape", default-features = false }
+numcodecs-sz3 = { version = "0.7", path = "codecs/sz3", default-features = false }
+numcodecs-tthresh = { version = "0.3", path = "codecs/tthresh", default-features = false }
+numcodecs-uniform-noise = { version = "0.4", path = "codecs/uniform-noise", default-features = false }
+numcodecs-zfp = { version = "0.6", path = "codecs/zfp", default-features = false }
+numcodecs-zfp-classic = { version = "0.4", path = "codecs/zfp-classic", default-features = false }
+numcodecs-zlib = { version = "0.4", path = "codecs/zlib", default-features = false }
+numcodecs-zstd = { version = "0.4", path = "codecs/zstd", default-features = false }
 
 # crates.io third-party dependencies
 anyhow = { version = "1.0.93", default-features = false }
@@ -90,17 +91,17 @@ simple_logger = { version = "5.0", default-features = false }
 miniz_oxide = { version = "0.8.5", default-features = false }
 ndarray = { version = "0.16.1", default-features = false } # keep in sync with numpy
 ndarray-rand = { version = "0.15", default-features = false }
-numpy = { version = "0.25", default-features = false }
+numpy = { version = "0.26", default-features = false }
 num-traits = { version = "0.2.19", default-features = false }
 openjpeg-sys = { version = "1.0", default-features = false }
 pco = { version = "0.4.5", default-features = false }
 polonius-the-crab = { version = "0.4", default-features = false }
 postcard = { version = "1.0.8", default-features = false }
-pyodide-webassembly-runtime-layer = { version = "0.8", default-features = false }
-pyo3 = { version = "0.25", default-features = false }
-pyo3-error = { version = "0.5", default-features = false }
-pyo3-log = { version = "0.12.4", default-features = false }
-pythonize = { version = "0.25", default-features = false }
+pyodide-webassembly-runtime-layer = { version = "0.10", default-features = false }
+pyo3 = { version = "0.26", default-features = false }
+pyo3-error = { version = "0.6", default-features = false }
+pyo3-log = { version = "0.13.0", default-features = false }
+pythonize = { version = "0.26", default-features = false }
 rand = { version = "0.9.1", default-features = false }
 schemars = { version = "1.0.3", default-features = false }
 scratch = { version = "1.0", default-features = false }
@@ -109,31 +110,31 @@ serde = { version = "1.0.218", default-features = false }
 serde-transcode = { version = "1.1", default-features = false }
 serde_json = { version = "1.0.140", default-features = false }
 serde_repr = { version = "0.1.3", default-features = false }
-sperr = { version = "0.1", default-features = false }
+sperr = { version = "0.2", default-features = false }
 sz3 = { version = "0.3", default-features = false }
 thiserror = { version = "2.0.12", default-features = false }
 tthresh = { version = "0.1", default-features = false }
 twofloat = { version = "0.8", default-features = false }
 vecmap-rs = { version = "0.2", default-features = false }
-wac-graph = { version = "0.7", default-features = false }
-wasi-sandboxed-component-provider = { version = "=0.2.3", default-features = false }
+wac-graph = { version = "0.8", default-features = false }
+wasi-sandboxed-component-provider = { version = "=0.2.6", default-features = false }
 wasi-logger = { version = "0.1", default-features = false }
-wasi-preview1-component-adapter-provider = { version = "33.0", default-features = false }
-wasmparser = { version = "0.235", default-features = false }
-wasmtime = { version = "33.0", default-features = false }
-wasmtime_runtime_layer = { version = "33.0", default-features = false }
-wasm-encoder = { version = "0.235", default-features = false }
-wasm_runtime_layer = { version = "0.5", default-features = false }
-wit-bindgen = { version = "0.43", default-features = false }
-wit-component = { version = "0.235", default-features = false }
-wit-parser = { version = "0.235", default-features = false }
+wasi-preview1-component-adapter-provider = { version = "37.0", default-features = false }
+wasmparser = { version = "0.240", default-features = false }
+wasmtime = { version = "37.0", default-features = false }
+wasmtime_runtime_layer = { version = "37.0", default-features = false }
+wasm-encoder = { version = "0.240", default-features = false }
+wasm_runtime_layer = { version = "0.6", default-features = false }
+wit-bindgen = { version = "0.46", default-features = false }
+wit-component = { version = "0.240", default-features = false }
+wit-parser = { version = "0.240", default-features = false }
 wyhash = { version = "0.6", default-features = false }
 zfp-sys = { version = "0.4.2", default-features = false }
 zstd = { version = "0.13", default-features = false }
 zstd-sys = { version = "2.0.12", default-features = false }
 
 # git third-party dependencies with non-upstream fixes
-wasm_component_layer = { git = "https://github.com/juntyr/wasm_component_layer.git", rev = "8e82d9d", version = "0.1", default-features = false }
+wasm_component_layer = { git = "https://github.com/juntyr/wasm_component_layer.git", rev = "ad80189", version = "0.1", default-features = false }
 
 [workspace.lints.rust]
 unsafe_code = "deny"

README.md

@@ -3,7 +3,7 @@
 [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 
-[MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+[MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 [repo]: https://github.com/juntyr/numcodecs-rs
 
 [Latest Version]: https://img.shields.io/crates/v/numcodecs

codecs/asinh/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "numcodecs-asinh"
-version = "0.3.0"
+version = "0.4.0"
 edition = { workspace = true }
 authors = { workspace = true }
 repository = { workspace = true }

codecs/asinh/README.md

@@ -3,7 +3,7 @@
 [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 
-[MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+[MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 [repo]: https://github.com/juntyr/numcodecs-rs
 
 [Latest Version]: https://img.shields.io/crates/v/numcodecs-asinh

codecs/asinh/src/lib.rs

@@ -3,7 +3,7 @@
 //! [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 //! [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 //!
-//! [MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+//! [MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 //! [repo]: https://github.com/juntyr/numcodecs-rs
 //!
 //! [Latest Version]: https://img.shields.io/crates/v/numcodecs-asinh

codecs/bit-round/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "numcodecs-bit-round"
-version = "0.3.0"
+version = "0.4.0"
 edition = { workspace = true }
 authors = { workspace = true }
 repository = { workspace = true }

codecs/bit-round/README.md

@@ -3,7 +3,7 @@
 [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 
-[MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+[MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 [repo]: https://github.com/juntyr/numcodecs-rs
 
 [Latest Version]: https://img.shields.io/crates/v/numcodecs-bit-round

codecs/bit-round/src/lib.rs

@@ -3,7 +3,7 @@
 //! [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 //! [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 //!
-//! [MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+//! [MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 //! [repo]: https://github.com/juntyr/numcodecs-rs
 //!
 //! [Latest Version]: https://img.shields.io/crates/v/numcodecs-bit-round

codecs/fixed-offset-scale/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "numcodecs-fixed-offset-scale"
-version = "0.3.0"
+version = "0.4.0"
 edition = { workspace = true }
 authors = { workspace = true }
 repository = { workspace = true }

codecs/fixed-offset-scale/README.md

@@ -3,7 +3,7 @@
 [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 
-[MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+[MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 [repo]: https://github.com/juntyr/numcodecs-rs
 
 [Latest Version]: https://img.shields.io/crates/v/numcodecs-fixed-offset-scale

codecs/fixed-offset-scale/src/lib.rs

@@ -3,7 +3,7 @@
 //! [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 //! [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 //!
-//! [MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+//! [MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 //! [repo]: https://github.com/juntyr/numcodecs-rs
 //!
 //! [Latest Version]: https://img.shields.io/crates/v/numcodecs-fixed-offset-scale

codecs/fourier-network/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "numcodecs-fourier-network"
-version = "0.2.0"
+version = "0.3.0"
 edition = { workspace = true }
 authors = { workspace = true }
 repository = { workspace = true }
@@ -18,6 +18,8 @@ keywords = ["fourier", "network", "numcodecs", "compression", "encoding"]
 burn = { workspace = true, features = ["std", "autodiff", "ndarray"] }
 itertools = { workspace = true, features = ["use_alloc"] }
 log = { workspace = true }
+# FIXME: bytemuck 1.24 fails to compile on 1.87
+bytemuck = { version = "=1.23.2", default-features = false }
 ndarray = { workspace = true, features = ["std"] }
 numcodecs = { workspace = true }
 num-traits = { workspace = true, features = ["std"] }

codecs/fourier-network/README.md

@@ -3,7 +3,7 @@
 [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 
-[MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+[MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 [repo]: https://github.com/juntyr/numcodecs-rs
 
 [Latest Version]: https://img.shields.io/crates/v/numcodecs-fourier-network

codecs/fourier-network/src/lib.rs

@@ -3,7 +3,7 @@
 //! [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 //! [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 //!
-//! [MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+//! [MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 //! [repo]: https://github.com/juntyr/numcodecs-rs
 //!
 //! [Latest Version]: https://img.shields.io/crates/v/numcodecs-fourier-network
@@ -46,6 +46,9 @@ use schemars::{JsonSchema, Schema, SchemaGenerator, json_schema};
 use serde::{Deserialize, Deserializer, Serialize, Serializer};
 use thiserror::Error;
 
+// FIXME: bytemuck 1.24 fails to compile on 1.87
+use ::bytemuck as _;
+
 #[cfg(test)]
 use ::serde_json as _;
 

codecs/fourier-network/tests/config.rs

@@ -6,8 +6,8 @@ use serde::Deserialize;
 use serde_json::json;
 
 use ::{
-    burn as _, itertools as _, log as _, ndarray as _, num_traits as _, schemars as _,
-    simple_logger as _, thiserror as _,
+    burn as _, bytemuck as _, itertools as _, log as _, ndarray as _, num_traits as _,
+    schemars as _, simple_logger as _, thiserror as _,
 };
 
 #[test]

codecs/fourier-network/tests/schema.rs

@@ -4,8 +4,8 @@ use numcodecs::{DynCodecType, StaticCodecType};
 use numcodecs_fourier_network::FourierNetworkCodec;
 
 use ::{
-    burn as _, itertools as _, log as _, ndarray as _, num_traits as _, schemars as _, serde as _,
-    serde_json as _, simple_logger as _, thiserror as _,
+    burn as _, bytemuck as _, itertools as _, log as _, ndarray as _, num_traits as _,
+    schemars as _, serde as _, serde_json as _, simple_logger as _, thiserror as _,
 };
 
 #[test]

codecs/identity/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "numcodecs-identity"
-version = "0.3.0"
+version = "0.4.0"
 edition = { workspace = true }
 authors = { workspace = true }
 repository = { workspace = true }

codecs/identity/README.md

@@ -3,7 +3,7 @@
 [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 
-[MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+[MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 [repo]: https://github.com/juntyr/numcodecs-rs
 
 [Latest Version]: https://img.shields.io/crates/v/numcodecs-identity

codecs/identity/src/lib.rs

@@ -3,7 +3,7 @@
 //! [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 //! [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 //!
-//! [MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+//! [MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 //! [repo]: https://github.com/juntyr/numcodecs-rs
 //!
 //! [Latest Version]: https://img.shields.io/crates/v/numcodecs-identity

codecs/jpeg2000/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "numcodecs-jpeg2000"
-version = "0.2.0"
+version = "0.3.0"
 edition = { workspace = true }
 authors = { workspace = true }
 repository = { workspace = true }

codecs/jpeg2000/README.md

@@ -3,7 +3,7 @@
 [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 
-[MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+[MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 [repo]: https://github.com/juntyr/numcodecs-rs
 
 [Latest Version]: https://img.shields.io/crates/v/numcodecs-jpeg2000

codecs/jpeg2000/src/lib.rs

@@ -3,7 +3,7 @@
 //! [CI Status]: https://img.shields.io/github/actions/workflow/status/juntyr/numcodecs-rs/ci.yml?branch=main
 //! [workflow]: https://github.com/juntyr/numcodecs-rs/actions/workflows/ci.yml?query=branch%3Amain
 //!
-//! [MSRV]: https://img.shields.io/badge/MSRV-1.86.0-blue
+//! [MSRV]: https://img.shields.io/badge/MSRV-1.87.0-blue
 //! [repo]: https://github.com/juntyr/numcodecs-rs
 //!
 //! [Latest Version]: https://img.shields.io/crates/v/numcodecs-jpeg2000

codecs/linear-quantize/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "numcodecs-linear-quantize"
-version = "0.4.0"
+version = "0.5.0"
 edition = { workspace = true }
 authors = { workspace = true }
 repository = { workspace = true }