chore: migrate project configuration to pyproject.toml (PEP 621)

.github/workflows/deploy-docs.yml

@@ -26,18 +26,17 @@ jobs:
         init-shell: bash
         create-args: >-
           python=3 pip
-          --file requirements.txt
           --file requirements-dev.txt
           --channel conda-forge
 
     - name: Install on pyobis
       shell: bash -l {0}
       run: |
-        python -m pip install -e . --no-deps --force-reinstall
+        python -m pip install -e . --force-reinstall
 
     - name: Get the version
       id: get_version
-      run: echo ::set-output name=VERSION::$(python setup.py --version)
+      run: echo "VERSION=$(python -c "from importlib.metadata import version; print(version('pyobis'))")" >> $GITHUB_OUTPUT
 
     - name: Build documentation
       shell: bash -l {0}

.github/workflows/tests.yml

@@ -7,7 +7,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12","3.13","3.14"]
         os: [windows-latest, ubuntu-latest, macos-latest]
       fail-fast: false
 
@@ -21,14 +21,13 @@ jobs:
         init-shell: bash
         create-args: >-
           python=${{ matrix.python-version }} pip
-          --file requirements.txt
           --file requirements-dev.txt
           --channel conda-forge
 
     - name: Install on pyobis
       shell: bash -l {0}
       run: |
-        python -m pip install -e . --no-deps --force-reinstall
+        python -m pip install -e . --force-reinstall
 
     - name: Run Unit Tests
       shell: bash -l {0}

CONTRIBUTING.md

@@ -39,9 +39,8 @@ System prerequisites: python3
 git clone [email protected]:iobis/pyobis.git
 cd pyobis
 # install
-python -m pip install -r requirements.txt
-python -m pip install -r requirements-dev.txt
 python -m pip install -e .
+python -m pip install -r requirements-dev.txt
 # test your installation
 python -m pytest
 # test and generate a coverage report

pyproject.toml

@@ -1,3 +1,42 @@
 [build-system]
 requires = ["setuptools>=41.2", "setuptools_scm", "wheel"]
 build-backend = "setuptools.build_meta"
+
+[project]
+name = "pyobis"
+dynamic = ["version"]
+description = "Python client for OBIS"
+readme = "README.md"
+requires-python = ">=3.10"
+license = {text = "MIT"}
+authors = [
+    {name = "pyOBIS Community", email = "[email protected]"}
+]
+classifiers = [
+    "Development Status :: 5 - Production/Stable",
+    "Intended Audience :: Science/Research",
+    "License :: OSI Approved :: MIT License",
+    "Operating System :: OS Independent",
+    "Natural Language :: English",
+    "Programming Language :: Python :: 3",
+    "Topic :: Scientific/Engineering :: Bio-Informatics",
+]
+dependencies = [
+    "pandas",
+    "requests>=2.7",
+    "requests-cache>=1.2.0,<2.0.0",
+    "urllib3<2.0.0",
+]
+
+[project.urls]
+Documentation = "https://iobis.github.io/pyobis"
+"Bug Tracker" = "https://github.com/iobis/pyobis"
+"Source Code" = "https://github.com/iobis/pyobis"
+
+[tool.setuptools]
+packages = ["pyobis"]
+
+[tool.setuptools_scm]
+write_to = "pyobis/_version.py"
+write_to_template = '__version__ = "{version}"'
+tag_regex = "^(?P<prefix>v)?(?P<version>[^\\+]+)(?P<suffix>.*)?$"