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--euk_check triggers 18S HMM search on OrfM-translated sequences when using AA-targeting gpkg, causing HMMER parse error

Status: Open.

#293 In geronimp/graftM;

· bcoltman opened on Jan 22, 2026

Improve testing: relax jplace eqality and other fixes

Status: Open.

#289 In geronimp/graftM;

· geronimp opened on Nov 5, 2025

Inquiry

Status: Open.

#288 In geronimp/graftM;

· LanSabb opened on Sep 11, 2025

Difference between search_otu_table and combined_count_table. Multiple hmm searches.

Status: Open.

#285 In geronimp/graftM;

· robcli opened on Aug 29, 2024

low number of reads detected

Status: Open.

#284 In geronimp/graftM;

· rzhan186 opened on Mar 1, 2024

GraftM graft on big metagenome error

Status: Open.

#277 In geronimp/graftM;

· steff1088 opened on Apr 26, 2022

working with non-gene sequences

Status: Open.

#269 In geronimp/graftM;

· bakeronit opened on Jul 19, 2021

Issue running graftm create using docker

Status: Open.

#268 In geronimp/graftM;

· erins1 opened on Oct 28, 2020

error using decoy_database with hmmsearch+diamond

Status: Open.

#267 In geronimp/graftM;

· yboesch opened on Jun 19, 2020

graftM create error

Status: Open.

#265 In geronimp/graftM;

· adityabandla opened on May 11, 2020

Error: TC bit thresholds unavailable on model graftmrzdqhx.aln

Status: Open.

#264 In geronimp/graftM;

· sarah872 opened on Dec 23, 2019

graft_package_version error on custom GraftM package

Status: Open.

#259 In geronimp/graftM;

· fletchec99 opened on Mar 15, 2019