Skip to content

Following probe mapping link throws error #932

Description

@rupertoverall

Clicking on the 'Probes' link on the following page: https://genenetwork.org/show_trait?trait_id=cd019172&dataset=UTHSC_BXD_Hip_MBD_0824 throws the following error:

MOD_PYTHON ERROR

ProcessId:      15134
Interpreter:    'GeneNetwork'

ServerName:     'gn1.genenetwork.org'
DocumentRoot:   '/home/gn1/production/gnshare/gn/web/'

URI:            '/webqtl/main.py'
Location:       None
Directory:      '/home/gn1/production/gnshare/gn/web/webqtl/'
Filename:       '/home/gn1/production/gnshare/gn/web/webqtl/main.py'
PathInfo:       ''

Phase:          'PythonHandler'
Handler:        'main'

Traceback (most recent call last):

  File "gnu/store/qqwmxqcp4vi0m0n3c4d632lhvwgkqyvz-httpd-with-mod-python-2.2.34/lib/python2.4/site-packages/mod_python/importer.py", line 1537, in HandlerDispatch

  File "gnu/store/qqwmxqcp4vi0m0n3c4d632lhvwgkqyvz-httpd-with-mod-python-2.2.34/lib/python2.4/site-packages/mod_python/importer.py", line 1229, in _process_target

  File "gnu/store/qqwmxqcp4vi0m0n3c4d632lhvwgkqyvz-httpd-with-mod-python-2.2.34/lib/python2.4/site-packages/mod_python/importer.py", line 1128, in _execute_target

  File "/home/gn1/production/gnshare/gn/web/webqtl/main.py", line 95, in handler
    page = ShowProbeInfoPage.ShowProbeInfoPage(fd)

  File "/home/gn1/production/gnshare/gn/web/webqtl/showTrait/ShowProbeInfoPage.py", line 57, in __init__
    fd.readGenotype()

  File "/home/gn1/production/gnshare/gn/web/webqtl/base/webqtlFormData.py", line 139, in readGenotype
    self.genotype_1 = gen_geno_ob.genotype(genofilelocation)

  File "/home/gn1/production/gnshare/gn/web/webqtl/utility/gen_geno_ob.py", line 25, in __init__
    self.read_file(filename)

  File "/home/gn1/production/gnshare/gn/web/webqtl/utility/gen_geno_ob.py", line 66, in read_file
    geno_file = open(filename, 'r')

IOError: [Errno 2] No such file or directory: '/gnshare/gn/web/genotypes/BXD-MBD-UTHSC.geno'


MODULE CACHE DETAILS

Accessed:       Sun Nov 16 11:24:43 2025
Generation:     1

_mp_66caccfcd9cc8b408dadeb184fe02ee4 {
  FileName:     '/home/gn1/production/gnshare/gn/web/webqtl/main.py'
  Instance:     1
  Generation:   1
  Modified:     Sat Mar  6 10:53:21 2021
  Imported:     Fri Nov 14 15:39:03 2025
}

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions