Gdr 3306

[bczech]

Description

What changed?

Related JIRA issue: GDR-3306

Why was it changed?

To add support for merging metadata correctly

Checklist for sustainable code base

• I added tests for any code changed/added
• I added documentation for any code changed/added
• I made sure naming of any new functions is self-explanatory and consistent

Logistic checklist

• Package version bumped
• Changelog updated

Screenshots (optional)

[gemini-code-assist]

Code Review

This pull request updates gDRutils to version 1.9.7 and enhances the merge_MAE function to support metadata synthesis. New parameters allow for custom titles, descriptions, and source identifiers, with logic added to aggregate these from input experiments. Feedback indicates that the current implementation incorrectly discards metadata from subsequent MAEs and introduces inconsistent data structures in merge_metadata. There is also redundant logic regarding source name determination and metadata overwriting that should be refactored, along with a need for more robust handling of partially missing dataset names.

[gladkia]

GJ!

[j-smola]

The combined data will have nice metadata thanks to this task. That's great.
However, the problem with duplicate records still persists.

DrugName	Gnumber	CellLineName	source_id
[ drug_001	gnum1.1-1	cellline_AB	mae_1
[ drug_001	gnum1.1-2	cellline_AB	mae_1
[ drug_001	gnum1.1-1	cellline_AB	mae_2

[bczech]

The combined data will have nice metadata thanks to this task. That's great. However, the problem with duplicate records still persists.

DrugName Gnumber CellLineName source_id
[ drug_001 gnum1.1-1 cellline_AB mae_1
[ drug_001 gnum1.1-2 cellline_AB mae_1
[ drug_001 gnum1.1-1 cellline_AB mae_2

Hmm, I don't know what do you mean. Could you please provide the reproductive code? This task and PR were created to properly manage metadata for DSDB pushing