All issues

`download?style=ga` emits unversioned `tool_id`s, producing workflows that save but cannot be invoked

#591

· scottcain opened

on Sep 18, 2026

Authoring never checks a wrapped script's own declared input-ordering assumption against the tool it will consume from

#590

· scottcain opened

on Sep 18, 2026

`PUT /api/workflows/{id}` defaults `exact_tools` to true and discards the per-step detail it already computed

#589

· scottcain opened

on Sep 18, 2026

A `sample_sheet` column was wired onto a plain scalar tool port, a binding that can never work

#588

· scottcain opened

on Sep 18, 2026

gxformat2 has no `tool_uuid`, so a step bound to a registered UDT imports unresolved

#587

· scottcain opened

on Sep 18, 2026

Galaxy's unprivileged-tool lint fails opaquely on an integer input with `value: 0`

#586

· scottcain opened

on Sep 18, 2026

The real UDT registration endpoint is `/api/unprivileged_tools`, not the admin-only `/api/dynamic_tools`

#585

· scottcain opened

on Sep 18, 2026

Invocation-failure reference has no tell for a stale toolbox read vs. a real install failure

#584

· scottcain opened

on Sep 18, 2026

`replacement_collection` indexes `rows` unconditionally, crashing Planemo staging for a `sample_sheet` input without `rows`

#583

· scottcain opened

on Sep 18, 2026

No documented path for an authored `GalaxyUserTool` to reach a Planemo-managed toolbox

#582

· scottcain opened

on Sep 18, 2026

`gxwf validate --connections` crashes on an ordinary format2 dict-shaped `step.in`

#581

· scottcain opened

on Sep 18, 2026

`comments: type: frame` authored without `position`/`size` is rejected by real Galaxy import

#580

· scottcain opened

on Sep 18, 2026