Makefile

.PHONY: validate test typecheck generated check-generated check assemble-pipelines check-assemble-pipelines fixtures fixtures-nextflow fixtures-cwl fixtures-iwc fixtures-skeletons fixtures-verify fixtures-clean sync-planemo sync-planemo-cli sync-planemo-test-report-schema sync-planemo-cli-meta check-planemo-cli

FOUNDRY_BUILD := npx tsx packages/build-cli/src/bin/foundry-build.ts
PIPELINE_SLUGS := $(patsubst content/pipelines/%/index.md,%,$(wildcard content/pipelines/*/index.md))

validate:
	npm run validate

test:
	npm run test

typecheck:
	npm run typecheck

generated:
	npm run dashboard
	npm run index

check-generated:
	npm run check:dashboard
	npm run check:index

assemble-pipelines:
	@for p in $(PIPELINE_SLUGS); do echo "assemble $$p"; $(FOUNDRY_BUILD) assemble-pipeline --root . $$p || exit 1; done

check-assemble-pipelines:
	@for p in $(PIPELINE_SLUGS); do $(FOUNDRY_BUILD) assemble-pipeline --root . $$p --check || exit 1; done

check: validate check-generated check-assemble-pipelines test

fixtures:
	$(MAKE) -C workflow-fixtures all

fixtures-nextflow:
	$(MAKE) -C workflow-fixtures nextflow

fixtures-cwl:
	$(MAKE) -C workflow-fixtures cwl

fixtures-iwc:
	$(MAKE) -C workflow-fixtures iwc

fixtures-skeletons:
	$(MAKE) -C workflow-fixtures skeletons

fixtures-verify:
	$(MAKE) -C workflow-fixtures verify

fixtures-clean:
	$(MAKE) -C workflow-fixtures clean

# --- Planemo vendored artifacts ---
# Requires `planemo` on PATH. Pin version lives in content/cli/planemo/index.md.
# Install with: uvx --from planemo==<version> planemo --version

sync-planemo: sync-planemo-cli-meta sync-planemo-test-report-schema sync-planemo-cli

sync-planemo-cli:
	npm run sync:planemo-cli

check-planemo-cli:
	npm run check:planemo-cli

sync-planemo-test-report-schema:
	pnpm --filter @galaxy-foundry/planemo-test-report-schema run sync:from-planemo

sync-planemo-cli-meta:
	pnpm --filter @galaxy-foundry/planemo-cli-meta run sync:from-planemo