[MSD-496][test] JEOL METEOR: adjust axes range to match JEOL simulator

[pieleric]

The new version of the simple JEOL simulator v1.0.7 is more picky about
the axes ranges, and more realistic. Z can never go as low as 0.
=> update the ranges, and positions, and adjust the test case to always stay within the
"Base" range.

[coderabbitai]

📝 Walkthrough

Walkthrough

This pull request updates the JEOL simulator stage configuration and corresponding test case. The stage simulator travel ranges are narrowed: the X-axis range changes from [-55e-3, 10e-3] to [-10e-3, 10e-3], and the Z-axis minimum increases from 0e-3 to 1.5e-3]. Associated metadata values are updated including calibration displacement, imaging range, and deactive position offset. A corresponding test case is adjusted to use a Z-axis value of 4.85e-3 instead of 0.85e-3 to remain within the new stage range constraints.

Possibly related PRs

• [METEOR-1481] [feat] Add METEOR support for JEOL JIB-4700F #3248: Directly adjusts the same JEOL simulator YAML configuration and test file to refine stage ranges and positioning parameters.
• [fix] test cases in move_test.py for zeiss #3214: Modifies the same test case and addresses stage Z-axis handling in the transformation logic to ensure moveAbs operations stay within valid ranges.

🚥 Pre-merge checks | ✅ 2 | ❌ 1

❌ Failed checks (1 warning)

Check name	Status	Explanation	Resolution
Docstring Coverage	⚠️ Warning	Docstring coverage is 0.00% which is insufficient. The required threshold is 80.00%.	Write docstrings for the functions missing them to satisfy the coverage threshold.

✅ Passed checks (2 passed)

Check name	Status	Explanation
Description check	✅ Passed	The description is directly related to the changeset, explaining the rationale for updating axes ranges and test positions to match JEOL simulator v1.0.7's stricter requirements.
Title check	✅ Passed	The title accurately describes the main change: adjusting axes ranges in JEOL METEOR tests to match the simulator, which is directly supported by both file modifications.

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✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests

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[Copilot]

Pull request overview

Updates the METEOR JEOL simulator configuration and its movement tests to accommodate stricter axis-range constraints introduced in JEOL simulator v1.0.7 (notably that Z cannot reach 0).

Changes:

• Adjusts the JEOL simulator stage X/Z ranges and related calibration/metadata positions.
• Updates the JEOL movement test to use an initial Z value that stays within the simulator’s allowed range.

Reviewed changes

Copilot reviewed 2 out of 2 changed files in this pull request and generated 1 comment.

File	Description
src/odemis/acq/test/move_jeol_test.py	Updates a test’s initial stage Z to remain within the simulator’s valid range.
install/linux/usr/share/odemis/sim/meteor-jeol-sim.odm.yaml	Updates simulator stage limits/calibration and posture ranges/positions to match the newer JEOL simulator constraints.