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Possible parameter mismatch between BetaBinEstimation.py and `BaseCellCalling.step1.py'

Status: Open.

#93 In cortes-ciriano-lab/SComatic;

· eujinh opened on Jul 29, 2026

Parse Biosciences with target probe amplification

Status: Open.

#92 In cortes-ciriano-lab/SComatic;

· jasoncrucify opened on Jul 8, 2026

Inquiry regarding PoN file for mm10 scATAC-seq

Status: Open.

#91 In cortes-ciriano-lab/SComatic;

· XinyiLuo1230 opened on May 13, 2026

Parallelization by chromosome?

Status: Open.

#90 In cortes-ciriano-lab/SComatic;

· hwismer opened on Mar 16, 2026

Include libxcrypt as requirement in conda installation

Status: Open.

#89 In cortes-ciriano-lab/SComatic;

· mauripops opened on Jan 22, 2026

[Issue] Step 2 yielding only header (0 variants) despite high-sensitivity parameters in Step 1

Status: Open.

#88 In cortes-ciriano-lab/SComatic;

· bioaman opened on Jan 13, 2026

estimating run time?

Status: Open.

#84 In cortes-ciriano-lab/SComatic;

· proukakis opened on Apr 29, 2025

Analysis of Large Step1/Step2 Files: TSV to VCF Conversion?

Status: Open.

#83 In cortes-ciriano-lab/SComatic;

· thisishyunkoo opened on Apr 25, 2025

Criteria to call double base substitutions

Status: Open.

#81 In cortes-ciriano-lab/SComatic;

· leoplue opened on Apr 3, 2025

Outfile from computing the number of callable sites per cell

Status: Open.

#80 In cortes-ciriano-lab/SComatic;

· ICEDAMERICANOisgood opened on Mar 17, 2025

No match when trying to intersect variants called from bulk WGS and SComatic

Status: Open.

#79 In cortes-ciriano-lab/SComatic;

· Urja25 opened on Mar 10, 2025

iltering High Number of Mutations in SComatic

Status: Open.

#78 In cortes-ciriano-lab/SComatic;

· aleednn opened on Mar 3, 2025