v0.4.1

What's Changed

• fix: added option to generate growth curve from .tsv hist back in
• fix: fixed an issue where reports failed to generate for graph sections without names

Full Changelog: v0.4.0...v0.4.1

Version 0.4.0

What's Changed

• feat: possibility to report intermediate json files that can be combined using the new render command
• feat: add your own reports generated by other tools to panacus using the new !Custom
• feat: the panacus report now allows downloading both pngs and svgs for all plots
• feat: NodeDistribution: select hexagons and download the nodes included in them
• fix: issue with the similarity calculation taking very long fixed
• fix: changed YAML syntax to be clearer
• fix: solved issues with the handling of depending analyses

New Contributors

• @CharlesCNorton made their first contribution in #72

Full Changelog: v0.3.3...v0.4.0

Version 0.3.3

What's Changed

• feat: add node distribution plots
• fix: group info plots not showing up correctly
• fix: pipelining issues preventing similarity and ordered-histgrowth being used together or with other analyses requesting all as the count type

Full Changelog: v0.3.2...v0.3.3

Version 0.3.2

What's changed

• fix: bp not being calculated when specifying all as the countable
• fix: quorum being displayed as ratio instead of percentage

Full Changelog: v0.3.1...v0.3.2

Version 0.3.1

What's Changed

• feat: similarity-based clustermaps
• feat: add --verbose to set log level to debug
• fix: templates missing from binary
• fix: walks orientation erroneously parsed as path orientation
• fix: default log level is now info

Full Changelog: 0.2.5...v0.3.1

0.3.0-2

What's changed

• fix: set zlib-ng dependency to zlib-ng-compat

Full Changelog: 0.3.0-1...0.3.0-2

0.3.0-1

What's changed

• fix: add serde derive feature

Full Changelog: 0.3.0...0.3.0-1

Version 0.3

What's Changed

• feat: Increase panacus' modularity
• feat: Add support for yaml config
• feat: New html reports

Full Changelog: 0.2.5...0.3.0

Bugfixes

What's Changed

• feat: Emit version number and commit hash
• fix: groups not working when using subsets
• fix: panacus-visualize rejecting ordered-histgrowth
• fix: coverage estimation on subsets in intervals
• fix: growth always showing hist
• fix: growth-html not showing the info section
• fix: growth not accepting hist histogram

Full Changelog: 0.2.4...0.2.5

New info command!

What's Changed

• feat: added info command to show basic stats of GFA file @heringerp @lucaparmigiani
• feat: added info section to html output to show basic stats of graph @heringerp
• fix: add MultiGzDecoder to allow working with .gz files with multiple blocks @sharkLoc
• fix: fixed array out of bounds error caused by empty group @danydoerr
• fix: ordered-histgrowth plots now show path names instead of indices @heringerp
• fix: improved counting for nodes with overlap multiple include/exclude intervals @danydoerr
• fix: solved overflow issue in hists @heringerp
• doc: added examples @heringerp
• doc: cleaned up README @heringerp
• doc: improved help texts @heringerp

Full Changelog: 0.2.3...0.2.4