For ITS2 analysis, run ITS_fullpipeline_V1.sh
For 18S rRNA gene analysis, run 18S_demultiplex_V1.pl then 18S_prepreads_V1.sh then 18S_uparse.99_V1.sh
The other eight scripts are referred to in the above scripts.
This repository was archived by the owner on Aug 31, 2021. It is now read-only.