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Protein Co-expression app view (#9)
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feat(citation): show collection reference (e.g. msnet preprint) in Ci…
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feat(citation): CiteCredit component on dataset panel (copy text/BibT…
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feat(collections): show unique genes/peptides on collection tiles (fa…
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feat(collections): show Features (quant) vs PSMs (identification)
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fix(de): link the download to the portal dataset page, not PRIDE
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feat(de): fixed per-dataset method — no user method selection
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merge: enriched metadata cards in the DE dataset picker
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merge: two-axis dataset quality/power badges in the DE frontend
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Merge branch 'feat/de-regulation-colors'
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Merge branch 'feat/de-qc-panel': render DE QC quality block
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merge: Applications catalog page + navbar simplification
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feat(de-ui): add Differential Expression nav link
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merge: Differential Expression frontend (3-stage DE explorer)
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merge: frontend compass review-batch (links util, CompassLinks, GapTa…
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docs(compass): bring docs current + add scoreboard & tiers pages
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feat(compass): deep-linkable URLs for every view
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compass-ui: Proteome Compass Vue view + wiring + docs (Phase 4 core)
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plan: Proteome Compass implementation plan (phased, TDD, reuses porta…
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brainstorm(compass): faceted set-query explorer + PA-vs-quantms compa…
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brainstorm(compass): scope to ALL 52 corpus species (not human-only)
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docs(phase 3): add Concepts + Peptide-search API & MCP pages
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