docs: follow up on #826 review items

[ypriverol]

Summary

• register characteristics[tissue supergroup] as an optional shared sample metadata field in the spec terms registry
• restore and align the organism part / tissue supergroup / sampling site guidance in the sample documentation
• add the missing changelog entries for the organism-part clarification and the metabolomics example SDRFs
• declare comment[sdrf template] values in the PXD073289 AB Sciex example so CI detects dia-acquisition
• clarify that a single canonical archive such as .raw.zip can already be recorded directly in comment[data file]

Context

These are the immediate follow-up fixes identified during the review of #826 after the release-style merge landed on master. The original review called out tissue supergroup as a forward reference; this PR now formalizes it instead of dropping it.

Validation

• parse_sdrf validate-sdrf --sdrf_file examples/PXD073289/PXD073289.sdrf.tsv --template dia-acquisition --use_ols_cache_only
• git diff --check

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ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 0ea679d3-3e8f-4705-b082-dcb30e32cbb6

📥 Commits

Reviewing files that changed from the base of the PR and between 6c440f7 and 180751e.

⛔ Files ignored due to path filters (2)

• examples/PXD073289/PXD073289.sdrf.tsv is excluded by !**/*.tsv
• sdrf-proteomics/TERMS.tsv is excluded by !**/*.tsv

📒 Files selected for processing (3)

• CHANGELOG.md
• psi-document/v1.1.0-dev/supplementary-files/sample-metadata-v1.1.0-dev.adoc
• sdrf-proteomics/README.adoc

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[codacy-production]

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