MiMB_16S

Required Software

Before running through this tutorial, you must have QIIME2 installed and activated. This has been tested with the QIIME2 2018.4 release, available at https://qiime2.org.

Running the Scripts

Run scripts in this order:

1. fetchFastq.sh

• This script will fetch example data and metadata from EBI (~30mins)
• Data from Permentier et al., 2016 (DOI: 10.1111/1744-7917.12381)

3. qiimeCommands.sh

• This script provides the commands for an entire QIIME analysis (~1hr 45mins)