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Document deployed SAM2, Connect Sequential, Rolling Ball, and point workers - #28

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docs-deployed-workers
Oct 6, 2026
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arjunrajlab merged 1 commit into
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docs-deployed-workers

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Summary

Fills documentation gaps for workers listed in AWSDeploy/scripts/workers.tsv (the production manifest):

  • tools-for-making-objects.md: SAM2 family intro, SAM2 automatic mask generator, SAM / SAM2 few-shot segmentation, SAM2 Refiner, SAM2 propagator and SAM2 video
  • tools-for-connecting-objects.md: Connect sequential, and when to use it vs. Connect timelapse
  • image-processing.md: Rolling Ball background subtraction; Stitch Refinement technical details updated for interior anchoring (Anchor overlap-DCT illumination fit in un-overlapped tile interiors ImageAnalysisProject#178)
  • measuring-object-properties.md: Point intensity and Point metrics
  • citations.md: SAM 2 citation
  • new-features.md: October entries for the #178 fix and the new docs

Parameter names and defaults come from each worker's entrypoint.py interface and Dockerfile labels on origin/master. Where a worker's README disagreed with its code (few-shot Max Mask Area: README says 0, interface default is 1000), the docs follow the code.

Still undocumented but deployed: Laplacian of Gaussian, StarDist, Claude natural-language analyzer, Blob overlap, Colony two-color intensity, Point count, Random Forest Classifier, Count connected objects, Distance to nearest blob, H&E Deconvolution.

Test plan

  • Verify GitBook rendering and new anchors (#sam2-tools-for-segmentation-refinement-and-tracking, #connect-sequential, #rolling-ball, #properties-for-point-objects, #segment-anything-model-2-sam-2)

🤖 Generated with Claude Code

…rkers

Adds docs for the SAM2 automatic mask generator, few-shot (SAM and
SAM2), Refiner, propagator and video workers; Connect Sequential;
Rolling Ball; Point intensity and Point metrics. Adds a SAM 2
citation, updates Stitch Refinement for ImageAnalysisProject #178,
and notes both in the October changelog.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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