chore: point CICD badge to main branch

[olivermeyer]

No description provided.

[Copilot]

Pull request overview

Adds ?branch=main to the CI/CD badge URL so it reflects the status of the main branch only.

Changes:

• Scoped the GitHub Actions CI/CD badge to the main branch

[claude]

Claude finished @olivermeyer's task in 2m 55s —— View job

---

✅ PR Review Complete: CI/CD Badge Update

I've reviewed PR #480 and the changes look good to merge. The author correctly addressed my previous blocking comment.

---

📋 Summary

What Changed:

• Added ?branch=main parameter to CI/CD badge URL in both docs/partials/README_header.md (source) and README.md (generated)
• This scopes the badge to show only the status of the main branch

Files Modified:

• ✅ docs/partials/README_header.md (line 5) - Source file
• ✅ README.md (line 8) - Auto-generated file (correctly updated)

---

✅ All Checks Pass

1. Commit Message Convention ✅

chore: point CICD badge to main branch

Follows conventional commit format (type: description)

2. Documentation Generation Workflow ✅

• Both source (docs/partials/README_header.md) and generated (README.md) files updated identically
• The _generate_readme() function in noxfile.py (line 401-415) concatenates partials into README.md
• Next docs build will regenerate README.md from the updated partial, preserving this change

3. Change Correctness ✅
The badge URL change is correct:

- [![](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml/badge.svg)](...)
+ [![](https://github.com/aignostics/python-sdk/actions/workflows/ci-cd.yml/badge.svg?branch=main)](...)

4. No Test Changes Required ✅
Documentation-only change, no code or test modifications needed

5. No Breaking Changes ✅
Visual change only - badge will now reflect main branch status consistently

---

💡 Why This Change Matters

Before: Badge showed workflow status for whichever branch GitHub Actions last ran on (could be PRs, feature branches, etc.)

After: Badge always shows the status of the main branch, providing a consistent indicator of production code health

This is especially important for medical device software where users need confidence in the stability of the main branch.

---

🎯 Recommendation

✅ APPROVED - Ready to merge

No blocking issues found. The change is:

• Correct and complete
• Follows repository conventions
• Addresses the previous review feedback properly

---

| Branch: chore/cicd-badge-main

[codecov]

❌ 1 Tests Failed:

Tests completed	Failed	Passed	Skipped
649	1	648	10

View the top 1 failed test(s) by shortest run time

tests.aignostics.application.cli_test::test_cli_run_execute_invalid_mapping_format

Stack Traces | 10s run time

runner = <typer.testing.CliRunner object at 0x7f6ccdf64230>
tmp_path = PosixPath('.../pytest-10/popen-gw0/test_cli_run_execute_invalid_m0')

    @pytest.mark.integration
    def test_cli_run_execute_invalid_mapping_format(runner: CliRunner, tmp_path: Path) -> None:
        """Check execute command fails with invalid mapping format."""
>       result = runner.invoke(
            cli,
            [
                "application",
                "run",
                "execute",
                HETA_APPLICATION_ID,
                str(tmp_path / RUN_CSV_FILENAME),
                str(tmp_path),
                "--mapping",
                ".*\\.tiff:staining_method:H&E",  # Wrong: colon instead of equals
            ],
        )

.../aignostics/application/cli_test.py:970: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
..../test-3-14-1/lib/python3.14.../site-packages/typer/testing.py:21: in invoke
    return super().invoke(
..../test-3-14-1/lib/python3.14.../site-packages/click/testing.py:494: in invoke
    return_value = cli.main(args=args or (), prog_name=prog_name, **extra)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14....../site-packages/typer/core.py:803: in main
    return _main(
..../test-3-14-1/lib/python3.14....../site-packages/typer/core.py:192: in _main
    rv = self.invoke(ctx)
         ^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14.............../site-packages/click/core.py:1830: in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14.............../site-packages/click/core.py:1830: in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14.............../site-packages/click/core.py:1830: in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14.............../site-packages/click/core.py:1226: in invoke
    return ctx.invoke(self.callback, **ctx.params)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14.............../site-packages/click/core.py:794: in invoke
    return callback(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14.../site-packages/typer/main.py:691: in wrapper
    return callback(**use_params)
           ^^^^^^^^^^^^^^^^^^^^^^
.../aignostics/application/_cli.py:493: in run_execute
    _abort_if_system_unhealthy()
.../aignostics/application/_cli.py:132: in _abort_if_system_unhealthy
    health = SystemService.health_static()
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.../aignostics/system/_service.py:146: in health_static
    return Service().health()
           ^^^^^^^^^^^^^^^^^^
.../aignostics/system/_service.py:161: in health
    components[f"{service_class.__module__}.{service_class.__name__}"] = service_class().health()
                                                                         ^^^^^^^^^^^^^^^^^^^^^^^^
.../aignostics/platform/_service.py:263: in health
    "api_public": self._determine_api_public_health(),
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.../aignostics/platform/_service.py:206: in _determine_api_public_health
    response = http.request(
..../test-3-14-1/lib/python3.14....../site-packages/urllib3/_request_methods.py:135: in request
    return self.request_encode_url(
..../test-3-14-1/lib/python3.14....../site-packages/urllib3/_request_methods.py:182: in request_encode_url
    return self.urlopen(method, url, **extra_kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14.../site-packages/urllib3/poolmanager.py:457: in urlopen
    response = conn.urlopen(method, u.request_uri, **kw)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14....../site-packages/urllib3/connectionpool.py:787: in urlopen
    response = self._make_request(
..../test-3-14-1/lib/python3.14....../site-packages/urllib3/connectionpool.py:534: in _make_request
    response = conn.getresponse()
               ^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14.../site-packages/urllib3/connection.py:571: in getresponse
    httplib_response = super().getresponse()
                       ^^^^^^^^^^^^^^^^^^^^^
..../test-3-14-1/lib/python3.14.../sentry_sdk/integrations/stdlib.py:135: in getresponse
    rv = real_getresponse(self, *args, **kwargs)
         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
../..................../_temp/uv-python-dir/cpython-3.14-linux-x86_64-gnu/lib/python3.14/http/client.py:1450: in getresponse
    response.begin()
../..................../_temp/uv-python-dir/cpython-3.14-linux-x86_64-gnu/lib/python3.14/http/client.py:336: in begin
    version, status, reason = self._read_status()
                              ^^^^^^^^^^^^^^^^^^^
../..................../_temp/uv-python-dir/cpython-3.14-linux-x86_64-gnu/lib/python3.14/http/client.py:297: in _read_status
    line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
../..................../_temp/uv-python-dir/cpython-3.14-linux-x86_64-gnu/lib/python3.14/socket.py:725: in readinto
    return self._sock.recv_into(b)
           ^^^^^^^^^^^^^^^^^^^^^^^
../..................../_temp/uv-python-dir/cpython-3.14-linux-x86_64-gnu/lib/python3.14/ssl.py:1304: in recv_into
    return self.read(nbytes, buffer)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <ssl.SSLSocket [closed] fd=-1, family=2, type=1, proto=6>, len = 131072
buffer = <memory at 0x7f6cce265d80>

    def read(self, len=1024, buffer=None):
        """Read up to LEN bytes and return them.
        Return zero-length string on EOF."""
    
        self._checkClosed()
        if self._sslobj is None:
            raise ValueError("Read on closed or unwrapped SSL socket.")
        try:
            if buffer is not None:
>               return self._sslobj.read(len, buffer)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
E               Failed: Timeout (>10.0s) from pytest-timeout.

../..................../_temp/uv-python-dir/cpython-3.14-linux-x86_64-gnu/lib/python3.14/ssl.py:1138: Failed

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[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud