Issues

• Question: GSEA vs ORA for downstream pathway analysis of rMATS output

  Xinglab/rmats-turbo#564 · Filter by author isaiao01 opened on Sep 9, 2026
  1

• rMATS-turbo changes sequence-IDs

  Xinglab/rmats-turbo#562 · Filter by author SimonHegele opened on Sep 1, 2026
  1

• [Feature Request] Consider computing p-values in log-space to avoid underflow to exact 0

  Xinglab/rmats-turbo#556 · Filter by author christophrippl opened on Jul 16, 2026
  10

• P-value of 1 for seemingly distinct PSI distributions

  Xinglab/rmats-turbo#554 · Filter by author Bendycar opened on May 19, 2026
  1

• Positive control A5SS not detected

  Xinglab/rmats-turbo#553 · Filter by author Klud112 opened on May 10, 2026
  1

• Significant alternative splicing detected by rMATS, but no corresponding transcript-level expression — expected behavior?

  Xinglab/rmats-turbo#552 · Filter by author Jia-nianhua opened on Apr 20, 2026
  3

• Is rMATS compatible with 3' end counting RNA-seq (e.g., Plasmidsaurus)?

  Xinglab/rmats-turbo#551 · Filter by author isaiao01 opened on Mar 26, 2026
  1

• target_count column returning 0 for samples that should have counts

  Xinglab/rmats-turbo#550 · Filter by author pedlop173-lgtm opened on Mar 9, 2026
  1

• CWL workflow can't run because of baseCommand that contains an entire command and not just a binary name

  Xinglab/rmats-turbo#547 · Filter by author adamnovak opened on Feb 27, 2026
  4

• Javascript in when condition at workflow level in CWL workflow is not licensed by InlineJavascriptRequirement

  Xinglab/rmats-turbo#546 · Filter by author adamnovak opened on Feb 27, 2026

• In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘Darts’

  Xinglab/rmats-turbo#544 · Filter by author Bioinfor-Lix opened on Feb 5, 2026
  1

• rmats output position coordinates

  Xinglab/rmats-turbo#543 · Filter by author SitaoZ opened on Jan 27, 2026
  1

• Error in PAIRADISE installation

  Xinglab/rmats-turbo#542 · Filter by author maja-nna opened on Jan 22, 2026
  1

• PSI filter recommendation

  Xinglab/rmats-turbo#541 · Filter by author Newuser-lab opened on Jan 21, 2026
  1

• About dPSI directions of two samples.

  Xinglab/rmats-turbo#540 · Filter by author zitonghe opened on Jan 20, 2026
  1

• splicing arc not appear in RI event sashimiplot with inclusionlevel=1.0

  Xinglab/rmats-turbo#539 · Filter by author jyoti25-lab opened on Jan 15, 2026
  1

• Questions on single-group PSI extraction and batch effects in rMATS

  Xinglab/rmats-turbo#538 · Filter by author Grace1206 opened on Dec 14, 2025
  3

• read_outcomes_by_bam : NOT_MATCHED_TO_ANNOTATION

  Xinglab/rmats-turbo#535 · Filter by author bassanio opened on Nov 26, 2025
  1

• error in post run

  Xinglab/rmats-turbo#534 · Filter by author Adamyazori opened on Nov 20, 2025
  2

• Issue with detecting novelsites

  Xinglab/rmats-turbo#533 · Filter by author nammideepthi opened on Nov 18, 2025
  2

• Why does an AS event have IJC/SJC counts in both samples but is missing from one sample's event list?

  Xinglab/rmats-turbo#532 · Filter by author beiloudawang-tech opened on Nov 12, 2025
  10

• More AS events detected in two-sample rMATS analysis than single-sample when using --novelSS

  Xinglab/rmats-turbo#531 · Filter by author beiloudawang-tech opened on Nov 11, 2025
  1

• How does rMATS determine novelty in fromGTF.novelJunction.[AS_Event].txt?

  Xinglab/rmats-turbo#529 · Filter by author EsperanzaDai opened on Oct 14, 2025
  3

• rMATS Analysis – Library Type and Batch Effect Handling

  Xinglab/rmats-turbo#527 · Filter by author Motoufiq opened on Sep 10, 2025
  8

• Request: support "pip install ."

  enhancement
  Xinglab/rmats-turbo#526 · Filter by author aowenson-imm opened on Sep 9, 2025