Generate alternatives

.gitignore

@@ -32,3 +32,9 @@ web.zip
 # Docker-compose
 
 postgres_data/*
+
+# Local PostgREST binary (platform-specific, ~17MB)
+database/postgrest
+
+# Local postgrest config
+database/postgrest.conf

CITATION.cff

@@ -40,6 +40,11 @@ authors:
     email: n.m.palmblad@lumc.nl
     affiliation: Leiden University Medical Center, Netherlands
     orcid: 'https://orcid.org/0000-0002-5865-8994'
+  - family-names: Strachardt
+    given-names: Aaron
+    email: aaron.strachardt@desy.de
+    affiliation: University of Potsdam, Germany
+    orcid: 'https://orcid.org/0009-0004-9542-1154'
 identifiers:
   - type: doi
     value: 10.5281/zenodo.10047136

package.json

@@ -15,6 +15,7 @@
     "@types/react-dom": "^18.0.10",
     "antd": "^5.23.1",
     "d3": "^7.8.5",
+    "dagre": "^0.8.5",
     "daisyui": "^2.49.0",
     "dotenv": "^16.0.3",
     "http-proxy-middleware": "^3.0.3",
@@ -25,6 +26,7 @@
     "react-dom": "^18.2.0",
     "react-router-dom": "^6.8.1",
     "react-scripts": "5.0.1",
+    "reactflow": "^11.11.4",
     "typescript": "^4.9.4",
     "web-vitals": "^2.1.4"
   },
@@ -53,6 +55,7 @@
     ]
   },
   "devDependencies": {
+    "@types/dagre": "^0.7.54",
     "tailwindcss": "^3.2.4"
   }
 }

src/components/Home.tsx

@@ -11,6 +11,7 @@ const Home: FC = () => {
       <div className="flex space-x-7 p-11 justify-center">
         <HomeBox label="Generate and Benchmark workflows" descr="Explore bioinformatics workflows generated according to your description" imgUrl={generate_img} buttonText="Explore" isEnabled={true} component="/explore/domain" />
         <HomeBox label="Visualize benchmarks" descr="Upload and visualize the benchmarks performed locally" imgUrl={benchmark_img} buttonText="Benchmark" isEnabled={true} component="/benchmark/visualize" />
+        <HomeBox label="Generate Workflow Alternatives" descr="Upload an existing CWL workflow and explore alternative workflows" imgUrl={benchmark_img} buttonText="Alternatives" isEnabled={true} component="/generate-alternatives" />
         <HomeBox label="How to use Workflomics?" descr="Explore the Workflomics documentation" imgUrl={history_img} buttonText="User Guide" isEnabled={true} component="https://workflomics.readthedocs.io/en/latest/user-guide/web-interface.html" />
       </div>
     </div>