v1.0.1

What's Changed

Bug Fixes

• Fixed Y-axis coordinate flip in denoiser — Particle coordinates are no longer mirrored in the Y-axis when using partinet denoise. Users on v1.0.0 should enable Flip in y in CryoSPARC when extracting particles picked on v1.0.0 denoised micrographs. This is not required in v1.0.1+.
• Added RELION-compatible STAR file output — partinet star now supports --relion, --relion-project-dir, and --mrc-prefix flags to generate a RELION pick.star manifest and per-micrograph coordinate STAR files under <relion_project>/partinet/. CryoSPARC output remains the default.
• Fixed Windows line endings (CRLF) in STAR output — STAR files now always use Unix line endings (LF), resolving import failures in RELION on files generated on Windows.
• Non-denoised detection input — the detect stage can now directly accept single-slice MRC files

Documentation

• Updated all stage docs and README to reflect RELION output support
• Added v1.0.0 compatibility note for the Y-axis flip workaround
• Corrected various typos and style choices

v1.0.0-preprint

PartiNet v1.0.0 - Initial stable release accompanying our pre-print submission.
This release provides a complete particle detection pipeline with support for MRC micrographs, custom denoising stages, and efficient batch processing capabilities. Key features include multi-GPU inference support, configurable detection parameters, and comprehensive documentation. The package is fully containerized for reproducible deployments.
Major components: core detection algorithms, training pipelines, batch inference tools, and initial documentation site.
Contributors: @edoyango @MihinP @jIskCoder