v0.5.17

StructuralIdentifiability v0.5.17

Diff since v0.5.16

Merged pull requests:

• Constructive membership update (#444) (@pogudingleb)
• adding influenza immune response benchmarks (#445) (@pogudingleb)
• CompatHelper: bump compat for AbstractAlgebra to 0.47, (keep existing compat) (#446) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.52, (keep existing compat) (#447) (@github-actions[bot])
• Removing RFF functionality and using the dedicated package (#449) (@pogudingleb)
• adding EAIHRD as test and benchmarks (#451) (@pogudingleb)
• CompatHelper: bump compat for SymbolicUtils in [weakdeps] to 4, (keep existing compat) (#452) (@github-actions[bot])
• bump RFF (#453) (@pogudingleb)
• Output detection in MTK and UTF issue (#457) (@pogudingleb)
• Bump version from 0.5.17 to 0.5.18 (#459) (@pogudingleb)
• Correcting version (#461) (@pogudingleb)

Closed issues:

• ModelingToolkit parsing error (#455)
• Inconsistensies between local and global identifiability (#456)

v0.5.16

StructuralIdentifiability v0.5.16

Diff since v0.5.15

Merged pull requests:

• Variable renaming (#416) (@pogudingleb)
• Benchmarking modernization (#418) (@pogudingleb)
• CompatHelper: bump compat for AbstractAlgebra to 0.46, (keep existing compat) (#422) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.51, (keep existing compat) (#423) (@github-actions[bot])
• fixing the random point generation in the wronskian computation (#424) (@pogudingleb)
• Saturation factorization (#425) (@pogudingleb)
• New Downgrade CI v2 (#426) (@ChrisRackauckas)
• Remove Julia v1.9 get_extension compatibility code (#427) (@ChrisRackauckas)
• Remove outdated Julia v1.7 version checks (#428) (@ChrisRackauckas)
• Add spell checking configuration (#429) (@ChrisRackauckas)
• Fix spelling errors and enhance spell checking for mathematical parameters (#430) (@ChrisRackauckas)
• Update CI to test on Julia 1, lts, and pre versions (#431) (@ChrisRackauckas)
• moving tests for rational functions to the subfolder (#432) (@pogudingleb)
• retaining original generators for the final casting (#435) (@pogudingleb)
• Simplification regimes & Polynomial generators (#436) (@pogudingleb)
• Yet another bump for DataStructures (#437) (@pogudingleb)
• Bump actions/checkout from 4 to 5 (#438) (@dependabot[bot])
• Minor changes in simplification (#440) (@pogudingleb)
• More explicit and informative error message for non-rational models (#441) (@pogudingleb)
• Adding benchmark reproducing the identifiability analysis from https://hal.science/hal-03739205v1 (#442) (@pogudingleb)
• bump version (#443) (@pogudingleb)

Closed issues:

• ModelingToolkit extension completely freezing Julia (#360)
• StackOverflowError during compilation on Julia 1.12 (#362)
• Better error for exponential parameters in structural identifiability extension (#417)
• Pessimistic Wronskian computation when searching for identifiable function (#421)

v0.5.15

StructuralIdentifiability v0.5.15

Diff since v0.5.14

Merged pull requests:

• Bump actions/checkout from 2 to 4 (#401) (@dependabot[bot])
• Fixing the internal_ordering (#403) (@pogudingleb)
• Fix a typo in reparametrization.md (#405) (@sumiya11)
• Bump crate-ci/typos from 1.29.5 to 1.31.2 (#406) (@dependabot[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.45, (keep existing compat) (#408) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.50, (keep existing compat) (#410) (@github-actions[bot])
• Bump crate-ci/typos from 1.31.2 to 1.33.1 (#413) (@dependabot[bot])
• Update for MTK v10 (#414) (@ChrisRackauckas)
• Fix typo in README.md (#415) (@matbesancon)

Closed issues:

• Structural Identifiability is broken for systems with array parameters (#398)

v0.5.14

StructuralIdentifiability v0.5.14

Diff since v0.5.13

Merged pull requests:

• Forcing zero-dimensionality for rational function field computation: Part I, field membership (#394) (@pogudingleb)
• Bump Groebner 0.9 and use new functionality (#395) (@pogudingleb)
• Adding CI to benchmark performance (#396) (@pogudingleb)
• Separate QA tests from Core (#397) (@ChrisRackauckas)
• Make the performance workflow optional and manually runnable (#399) (@pogudingleb)
• Scalarizing MTK parameters (#400) (@pogudingleb)

v0.5.13

StructuralIdentifiability v0.5.13

Diff since v0.5.12

Merged pull requests:

• Bump crate-ci/typos from 1.28.4 to 1.29.4 (#378) (@dependabot[bot])
• ci(dependabot): open dependabot PRs only for major versions (#380) (@thazhemadam)
• Adding zero-dim check to quotient_basis (#382) (@pogudingleb)
• Bump crate-ci/typos from 1.29.4 to 1.29.5 (#383) (@dependabot[bot])
• Test the size of the generated systems (#384) (@sumiya11)
• Let each numerator have its own denominator (#385) (@sumiya11)
• Lincomp revision (#390) (@pogudingleb)

Closed issues:

• Assert zerodim in quotient_basis (#381)

v0.5.12

StructuralIdentifiability v0.5.12

Diff since v0.5.11

Merged pull requests:

• Updating the ordering used in MQS computation (#377) (@pogudingleb)
• doc: make font style coherent (#379) (@albinahlback)

Closed issues:

• Identifiability for complex models with algebra equations (#376)

v0.5.11

StructuralIdentifiability v0.5.11

Diff since v0.5.10

Merged pull requests:

• Bump crate-ci/typos from 1.28.2 to 1.28.4 (#373) (@dependabot[bot])
• Bump groebner (#374) (@pogudingleb)
• Fixing function for exporting into other formats (#375) (@pogudingleb)

Closed issues:

• StructuralIdentifiability fails to precompile under Julia v1.11 (#364)

v0.5.10

StructuralIdentifiability v0.5.10

Diff since v0.5.9

Merged pull requests:

• Bump crate-ci/typos from 1.23.6 to 1.24.1 (#350) (@dependabot[bot])
• Bump crate-ci/typos from 1.24.1 to 1.24.3 (#351) (@dependabot[bot])
• Bump crate-ci/typos from 1.24.3 to 1.24.5 (#352) (@dependabot[bot])
• Bump crate-ci/typos from 1.24.5 to 1.24.6 (#353) (@dependabot[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.43, (keep existing compat) (#354) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.47, (keep existing compat) (#355) (@github-actions[bot])
• CompatHelper: bump compat for Groebner to 0.8, (keep existing compat) (#356) (@github-actions[bot])
• Bump crate-ci/typos from 1.24.6 to 1.26.8 (#365) (@dependabot[bot])
• Bump codecov/codecov-action from 4 to 5 (#368) (@dependabot[bot])
• Bump crate-ci/typos from 1.26.8 to 1.28.2 (#369) (@dependabot[bot])
• removing precompilation (#370) (@pogudingleb)

Closed issues:

• v0.5.9 compatibility with Catalyst (#349)
• Right hand side derivative (#359)

v0.5.9

StructuralIdentifiability v0.5.9

Diff since v0.5.8

Merged pull requests:

• Adding known_ic (known generic initial conditions) to the MTK interface (#331) (@pogudingleb)
• Adding MTK interface for the discrete-time identifiability (#332) (@pogudingleb)
• Bump crate-ci/typos from 1.22.0 to 1.22.3 (#333) (@dependabot[bot])
• Bump crate-ci/typos from 1.22.3 to 1.22.7 (#334) (@dependabot[bot])
• Bump crate-ci/typos from 1.22.7 to 1.22.9 (#335) (@dependabot[bot])
• Bump crate-ci/typos from 1.22.9 to 1.23.1 (#336) (@dependabot[bot])
• Bump crate-ci/typos from 1.23.1 to 1.23.2 (#337) (@dependabot[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.42, (keep existing compat) (#338) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.46, (keep existing compat) (#339) (@github-actions[bot])
• Bump crate-ci/typos from 1.23.2 to 1.23.3 (#340) (@dependabot[bot])
• Bump crate-ci/typos from 1.23.3 to 1.23.5 (#342) (@dependabot[bot])
• Bump crate-ci/typos from 1.23.5 to 1.23.6 (#343) (@dependabot[bot])
• Updating MTK interface (#346) (@pogudingleb)
• Fixing downgrade tests (#347) (@pogudingleb)

Closed issues:

• Cannot (?) use known_ic in combination with MTK variables (#324)
• SI not compatible with latest Symbolics, SymbolicUtils, and ModelingToolkit versions (#326)

v0.5.8

StructuralIdentifiability v0.5.8

Diff since v0.5.7

Merged pull requests:

• Bump crate-ci/typos from 1.20.8 to 1.20.9 (#313) (@dependabot[bot])
• CompatHelper: bump compat for AbstractAlgebra to 0.41, (keep existing compat) (#314) (@github-actions[bot])
• Bump crate-ci/typos from 1.20.9 to 1.20.10 (#315) (@dependabot[bot])
• CompatHelper: bump compat for Nemo to 0.44, (keep existing compat) (#316) (@github-actions[bot])
• CompatHelper: bump compat for Nemo to 0.45, (keep existing compat) (#319) (@github-actions[bot])
• Bump crate-ci/typos from 1.20.10 to 1.21.0 (#320) (@dependabot[bot])
• Restrict Julia version to <= 1.10.2 (#322) (@sumiya11)
• CompatHelper: bump compat for SymbolicUtils in [weakdeps] to 2, (keep existing compat) (#323) (@github-actions[bot])
• Bump crate-ci/typos from 1.21.0 to 1.22.0 (#325) (@dependabot[bot])
• Bump the symbolic libraries and fix deprecations (#327) (@ChrisRackauckas)
• Sequel to #327 (#328) (@pogudingleb)
• Lower bound for the Julia version (compat ne vinovat) (#329) (@pogudingleb)
• bounding julia version from above (#330) (@pogudingleb)

Closed issues:

• Cannot precompile on v1.10.3 (#321)