Summer 2025

Key changes include file reorganization and a shift away from GitHub, Google Sheets, and JSON in favor of factor data type and more in-depth exploration of functional programming/iteration.

What's Changed

• Setup24 by @carriewright11 in #157
• updating setup to include config package and rendering html by @carriewright11 in #158
• adding setup.pdf by @carriewright11 in #159
• Setup24 by @carriewright11 in #160
• updating lab to not have two headings for subsetting part 1 by @carriewright11 in #161
• Data I/O - minor tweaks from last time by @avahoffman in #162
• Missing Data update by @avahoffman in #163
• Cleaning24 by @carriewright11 in #165
• one small fix for subsetting lab by @carriewright11 in #166
• fixing merging lab to not have two number 5 questions by @carriewright11 in #167
• small changes to subsetting part 2 by @carriewright11 in #182
• adding cleaning part2 updates by @carriewright11 in #183
• updating reshaping lab by @carriewright11 in #184
• Data IO corrections post-class by @avahoffman in #176
• Small modifications to summarize to include some brief info about factors by @avahoffman in #185
• new changes to merging by @carriewright11 in #186
• Missing pdf for Subsetting part 2 (already sent to students) by @avahoffman in #187
• Cleaning24 quick by @carriewright11 in #192
• Functional programming and adv IO updates by @avahoffman in #194
• Fix file names by @avahoffman in #195
• slack message by @carriewright11 in #200
• Slack message by @carriewright11 in #201
• updating config for 2025 by @carriewright11 in #202
• Contribute by @carriewright11 in #203
• updating rmarkdown lab by @carriewright11 in #204
• Data io updates by @avahoffman in #206
• adding pdfs for intro and rep lectures by @carriewright11 in #207
• Missing data 2025 updates by @carriewright11 in #209
• Subsetting part 1 updates for 2025 by @carriewright11 in #208
• updating index with pdfs by @carriewright11 in #210
• Subsetting2 by @carriewright11 in #211
• Cleaning. part 1 25 by @carriewright11 in #212
• adding rendering for missing data lab by @carriewright11 in #215
• updating pdfs by @carriewright11 in #218
• Data io updates by @avahoffman in #220
• changing out diff pdf version by @carriewright11 in #225
• adding html and rmd to include day 1 recap for subsetting part 2 by @carriewright11 in #226
• updating cleaning part 1 by @carriewright11 in #228
• Add updates - use ufo data because yts is tricky by @avahoffman in #227
• Cleaning part 2 by @carriewright11 in #229
• Summarization - a few more small tweaks! by @avahoffman in #230
• Remove n() to save time by @avahoffman in #237
• Data io updates - remove yts by @avahoffman in #240
• Clarify question in reshaping lab by @avahoffman in #239
• Adv io updates by @avahoffman in #241
• GitHub updates by @avahoffman in #243
• updating functions by @carriewright11 in #242
• A few minor changes to the order of staging and commit by @avahoffman in #245
• Add resource about joining by @avahoffman in #252
• Update contribute.md by @carriewright11 in #244
• Add Rmd files ; reorder links by @avahoffman in #251
• A little reorganizing - for post 2025 by @avahoffman in #205

Full Changelog: 1.2023...1.2025

Summer 2023

@carriewright11 and @avahoffman taught this workshop.

Summary

We removed Bioconductor stuff and github deep dive in favor of more about missing data and stringr.

What's Changed

• starting 2023 updates by @carriewright11 in #101
• Carriewright11 patch 1 by @carriewright11 in #103
• small updates to setup by @carriewright11 in #104
• adding missing data lecture form Intro to R by @carriewright11 in #105
• getting rid of jhur by @carriewright11 in #107
• changing to SISBID website for data by @carriewright11 in #108
• Cleaning 23 by @carriewright11 in #109
• Missing data lab and Data summarization part 1 by @carriewright11 in #110
• removing NA stuff by @carriewright11 in #114
• updating markdown lab key by @carriewright11 in #115
• Missing data stuff by @carriewright11 in #113
• Schedule by @carriewright11 in #116
• Data IO 1 & 2 by @avahoffman in #117
• Rendering stuff! by @avahoffman in #118
• Cleaning by @carriewright11 in #119
• Update lab and lecture by @avahoffman in #127
• Fix link on website -- Resolves #123 by @avahoffman in #128
• Reshaping updates by @avahoffman in #129
• Subset cleaning by @carriewright11 in #130
• fixing part 2 lab by @carriewright11 in #131
• Merging/joining updates by @avahoffman in #132
• Minor tweaks by @avahoffman in #133
• fixing some stuff by @carriewright11 in #135
• fix some stuff in data cleaning by @carriewright11 in #136
• adding cleaning pdf by @carriewright11 in #137
• updates to cleaning part two to fit on slide by @carriewright11 in #144
• fixing cleaning problems function offset - which was there before by @carriewright11 in #149
• Day 3 updates by @avahoffman in #151
• Day 3 updates continued by @avahoffman in #153
• A few final changes before Day 3 by @avahoffman in #154

Full Changelog: 1.2022...1.2023

Summer 2022

These are the files and materials from teaching the course for the Summer Institute in July 2022. @avahoffman and @carriewright11 were the instructors. The course was taught using the RStudio cloud environment on the NHGRI AnVIL Platform. You can learn more about AnVIL here.

What's Changed

• Ava IO by @avahoffman in #21
• Ava io 2 by @avahoffman in #22
• Fix Urls to reflect new repo name and http://sisbid.github.io/Data-Wrangling/ page by @avahoffman in #23
• Summarization by @avahoffman in #24
• Reshape by @avahoffman in #25
• Add Joining lecture updates and lab by @avahoffman in #26
• updating intro link by @carriewright11 in #27
• Updates to the Advanced IO lecture/lab by @avahoffman in #29
• updating site links for rep research and pdfs by @carriewright11 in #28
• Creating setup guide for RStudio Cloud by @avahoffman in #30
• Build index.html by @avahoffman in #32
• Create welcome-email.txt by @avahoffman in #31
• updating data subsetting part 1 by @carriewright11 in #33
• updating subsetting lectures and labs by @carriewright11 in #34
• Data cleaning by @carriewright11 in #36
• fixing links for subsetting lab from 2 to 1 by @carriewright11 in #35
• Advanced io 2 by @avahoffman in #37
• Update links and add pdf by @avahoffman in #38
• changing functional programming lecture content - by @carriewright11 in #39
• adding index.html by @carriewright11 in #40
• Update github-lab.md by @avahoffman in #41
• Update sisbid_github_2021.pdf by @avahoffman in #42
• Update lecture by @avahoffman in #43
• Add more challenging question to joining lab by @avahoffman in #44
• updates to day 2 and day 3 material cw by @carriewright11 in #45
• little fix by @carriewright11 in #46
• Update Advanced IO lecture by @avahoffman in #54
• adding functional programming stuff by @carriewright11 in #55
• adding source to images by @carriewright11 in #56
• adding biocon stuff by @carriewright11 in #57
• Add wrap up link and pdf by @avahoffman in #58
• Change file name (had dashes not underscore) by @avahoffman in #59
• updating lecture by @carriewright11 in #60
• Update welcome-email.txt by @avahoffman in #65
• Intro updates by @avahoffman in #66
• Add final slide by @avahoffman in #67
• Update IO lectures/labs by @avahoffman in #68
• GitHub updates by @avahoffman in #69
• Repro 22 by @carriewright11 in #70
• Subset part1 2022 updates by @carriewright11 in #73
• Summarization updates by @avahoffman in #75
• Confirm links by @avahoffman in #72
• updating lab for subsetting part 1 for yr 2022 by @carriewright11 in #74
• Subset 2 22 by @carriewright11 in #76
• Reshaping by @avahoffman in #77
• Merging Data Updates by @avahoffman in #78
• updating cleaning lecture by @carriewright11 in #80
• Subset 2 22 by @carriewright11 in #83
• render cleaning by @avahoffman in #90
• Updates to advanced IO by @avahoffman in #92
• Functional Programming updates 2022 by @carriewright11 in #93
• updating bioconductor by @carriewright11 in #94
• Ahhhh typo by @avahoffman in #95
• updating pdfs by @carriewright11 in #96

New Contributors

• @avahoffman made their first contribution in #21
• @carriewright11 made their first contribution in #27

Full Changelog: https://github.com/SISBID/Data-Wrangling/commits/1.2022

2019 Final SISBID Module 1 Class

adding pdf of lab