Release 0.2.3

Bug fixes

• Fixed bug in --version handling of installed versions (#113 <https://github.com/NeuralEnsemble/cobrawap/pull/113>_)
• Fixed breaking syntax error in stage 2 (#115 <https://github.com/NeuralEnsemble/cobrawap/pull/115>_)

Other changes

• Housekeeping (#114 <https://github.com/NeuralEnsemble/cobrawap/pull/114>_)

Release 0.2.2

Bug fixes

• Fixed --version argument of cobrawap command (#95 <https://github.com/NeuralEnsemble/cobawap/pull/95>_)
• Fixed path handling issues (#92 <https://github.com/NeuralEnsemble/cobawap/pull/92>), (#101 <https://github.com/NeuralEnsemble/cobrawap/pull/101>)
• Fixed Python 3.12 compatibility (#105 <https://github.com/NeuralEnsemble/cobrawap/pull/105>_)

Other changes

• Fixed path issue in automated documentation builds (#102 <https://github.com/NeuralEnsemble/cobrawap/pull/102>_)
• Improved figure outputs (#98 <https://github.com/NeuralEnsemble/cobrawap/pull/98>_)
• Added --force-overwrite flag (#110 <https://github.com/NeuralEnsemble/cobrawap/pull/110>_)
• Various maintenance fixes (#86 <https://github.com/NeuralEnsemble/cobrawap/pull/86>), (#89 <https://github.com/NeuralEnsemble/cobrawap/pull/89>), (#90 <https://github.com/NeuralEnsemble/cobrawap/pull/90>), (#93 <https://github.com/NeuralEnsemble/cobrawap/pull/93>), (#97 <https://github.com/NeuralEnsemble/cobrawap/pull/97>), (#102 <https://github.com/NeuralEnsemble/cobrawap/pull/102>), (#107 <https://github.com/NeuralEnsemble/cobrawap/pull/107>), (#108 <https://github.com/NeuralEnsemble/cobrawap/pull/108>)

Release 0.2.1

Other changes

• Improved internal handling of pathnames (#79 <https://github.com/NeuralEnsemble/cobrawap/pull/79>_)
• Maintenance fixes, including dependency adjustments (#80 <https://github.com/NeuralEnsemble/cobrawap/pull/80>), (#80 <https://github.com/NeuralEnsemble/cobrawap/pull/80>)

Release 0.2.0

New functionality and features

• Ability to plot complete signal ranges using TSTART and TSTOP to None (#48)
• New default value 'None' for MAXIMA_THRESHOLD_WINDOW to indicate that the complete signal duration is considered (#49)
• Added additional keyword arguments to cobrawap command (#76)

Bug fixes

• Fixed bug related to updating of AnalogSignal names (#67)
• Fixed issue where roi_selection and spatial_derivative incorrectly handled boolean arguments (#65)
• Fixed issue related to directly specifying a stage from the cobrawap interface (#70)
• Fixed issue with cyclic boundary conditions during phase convolution (#66)

Documentation

• Updated README information (#59), (#74), (#77)

Other changes

• Automated package distribution to PyPI (#62)

Release 0.1.1

Documentation

• Added help statement for CLI client

Bug fixes

• Fixed install by disallowing Snakemake versions >=8.0.0, which are missing subworkflow support

Selected dependency changes

• snakemake >= 7.10.0, < 8.0.0

Release 0.1.0

The initial release of the Collaborative Brain Wave Analysis Pipeline (Cobrawap).