Merging with main #141
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Merging with main #141
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Fix and handle tabs in yaml files
update the ci to test python 3.13
IO of open foam files in python
Centralize postprocess
Add flat panel reactor tutorial and add it to the ci
Robustify post process
Fix compute fitted kla
…ead from phaseProperties
Fall cleanup
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| runs-on: ubuntu-latest | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| working-directory: ${{github.workspace}} | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
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| - name: Set up Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: '3.13' | ||
| cache: 'pip' | ||
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|
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| - name: Set up micromamba | ||
| uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| environment-name: test-env | ||
| create-args: >- | ||
| python=${{ matrix.python-version }} | ||
| channels: conda-forge | ||
| channel-priority: strict | ||
| cache-downloads: true | ||
| cache-env: true | ||
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| - name: Install dependencies | ||
| run: | | ||
| micromamba install --yes -n test-env -c conda-forge paraview | ||
| pip install --upgrade pip | ||
| pip install pytest | ||
| pip install pytest-cov | ||
| pip install -e . | ||
|
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| - name: Generate coverage report | ||
| run: | | ||
| pytest --cov=./ --cov-report=xml:coverage.xml | ||
| - name: Upload coverage to Codecov | ||
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| uses: codecov/codecov-action@v5 | ||
| with: | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| file: ./coverage.xml | ||
| flags: unittests | ||
| env_vars: OS,PYTHON | ||
| name: codecov-umbrella | ||
| fail_ci_if_error: false | ||
| verbose: true |
Check warning
Code scanning / CodeQL
Workflow does not contain permissions Medium
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Copilot Autofix
AI 3 months ago
To address this CodeQL warning, we should add an explicit permissions block in the workflow file. Since none of the workflow steps write to the repository or require elevated privileges, the minimum required permission for GITHUB_TOKEN is contents: read. The best way to fix the problem is to add the following under the workflow's top-level keys, immediately after name: CodeCov and before on:. This will apply contents: read permissions to all jobs in the workflow unless a more specific permissions block is later added.
Suggested changeset
1
.github/workflows/codecov.yml
| @@ -1,4 +1,6 @@ | ||
| name: CodeCov | ||
| permissions: | ||
| contents: read | ||
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| on: | ||
| push: |
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