Migrate jules pftparm metadata to jules shared

applications/jules/example/configuration.nml

@@ -239,18 +239,314 @@ z0_nvg_io=1.0,1.0e-4,1.0e-3,5.0e-4,
 z0hm_nvg_io=1.0e-7,2.5e-1,2.0e-1,2.0e-1,
 /
 &jules_pftparm
-albsnc_max_io=2.5e-1,2.5e-1,6.0e-1,6.0e-1,4.0e-1,
-alnir_io=0.341,0.272,0.369,0.368,0.395,
-alpar_io=0.057,0.041,0.071,0.083,0.074,
-catch0_io=5*0.5,
-dcatch_dlai_io=5*0.05,
-fsmc_p0_io=5*0.6,
-kext_io=0.5,0.5,1.0,1.0,0.5,
-knl_io=5*0.2,
-omega_io=0.101,0.083,0.132,0.135,0.115,
-omnir_io=0.788,0.545,0.864,0.787,0.785,
-z0hm_pft_io=1.0,1.0,0.01,0.01,0.01,
-z0v_io=1.1,1.1,0.22,0.22,1.0,
+a_wl_io=0.65,
+a_ws_io=10.0,
+act_jmax_io=50.0e3,
+act_vcmax_io=72.0e3,
+albsnc_max_io=2.5e-1,
+albsnc_min_io=3.0e-1,
+alnir_io=0.341,
+alpar_io=0.057,
+alpha_io=0.08,
+b_wl_io=1.667,
+c3_io='yes',
+can_struct_a_io=1.0,
+catch0_io=0.5,
+dcatch_dlai_io=0.05,
+dgl_dm_io=0.0,
+dgl_dt_io=9.0,
+dqcrit_io=0.090,
+ds_jmax_io=646.0,
+ds_vcmax_io=649.0,
+dust_veg_scj_io=0.0,
+dz0v_dh_io=5.0e-2,
+emis_pft_io=0.98,
+eta_sl_io=0.01,
+f0_io=0.875,
+fd_io=0.015,
+fsmc_of_io=0.0,
+fsmc_p0_io=0.6,
+g_leaf_0_io=0.25,
+glmin_io=1.0e-6,
+gsoil_f_io=1.0,
+hw_sw_io=0.5,
+infil_f_io=4.0,
+kext_io=0.5,
+kn_io=0.78,
+knl_io=0.2,
+kpar_io=0.5,
+lai_alb_lim_io=0.005,
+lma_io=0.0824,
+neff_io=0.8e-3,
+nl0_io=0.040,
+nmass_io=0.0210,
+nr_io=0.01726,
+nr_nl_io=1.0,
+ns_nl_io=0.1,
+nsw_io=0.0072,
+omega_io=0.101,
+omnir_io=0.788,
+orient_io='spherical',
+pft_name_io='brd_leaf',
+q10_leaf_io=2.0,
+r_grow_io=0.25,
+rootd_ft_io=3.0,
+sigl_io=0.0375,
+tleaf_of_io=273.15,
+tlow_io=0.0,
+tupp_io=36.0,
+vint_io=5.73,
+vsl_io=29.81,
+z0hm_pft_io=1.0,
+z0v_io=1.1,
+/
+&jules_pftparm
+a_wl_io=0.005,
+a_ws_io=1.0,
+act_jmax_io=50.0e3,
+act_vcmax_io=72.0e3,
+albsnc_max_io=6.0e-1,
+albsnc_min_io=8.0e-1,
+alnir_io=0.369,
+alpar_io=0.071,
+alpha_io=0.08,
+b_wl_io=1.667,
+c3_io='yes',
+can_struct_a_io=1.0,
+catch0_io=0.5,
+dcatch_dlai_io=0.05,
+dgl_dm_io=0.0,
+dgl_dt_io=0.0,
+dqcrit_io=0.100,
+ds_jmax_io=646.0,
+ds_vcmax_io=649.0,
+dust_veg_scj_io=1.0,
+dz0v_dh_io=1.0e-1,
+emis_pft_io=0.98,
+eta_sl_io=0.01,
+f0_io=0.900,
+fd_io=0.015,
+fsmc_of_io=0.0,
+fsmc_p0_io=0.6,
+g_leaf_0_io=0.25,
+glmin_io=1.0e-6,
+gsoil_f_io=1.0,
+hw_sw_io=0.5,
+infil_f_io=2.0,
+kext_io=1.0,
+kn_io=0.78,
+knl_io=0.2,
+kpar_io=0.5,
+lai_alb_lim_io=0.005,
+lma_io=0.0498,
+neff_io=0.8e-3,
+nl0_io=0.060,
+nmass_io=0.0219,
+nr_io=0.0162,
+nr_nl_io=1.0,
+ns_nl_io=1.0,
+nsw_io=0.01604,
+omega_io=0.132,
+omnir_io=0.864,
+orient_io='spherical',
+pft_name_io='c3_grass',
+q10_leaf_io=2.0,
+r_grow_io=0.25,
+rootd_ft_io=0.5,
+sigl_io=0.0250,
+tleaf_of_io=258.15,
+tlow_io=0.0,
+tupp_io=36.0,
+vint_io=6.42,
+vsl_io=40.96,
+z0hm_pft_io=0.01,
+z0v_io=0.22,
+/
+&jules_pftparm
+a_wl_io=0.005,
+a_ws_io=1.0,
+act_jmax_io=50.0e3,
+act_vcmax_io=72.0e3,
+albsnc_max_io=6.0e-1,
+albsnc_min_io=8.0e-1,
+alnir_io=0.368,
+alpar_io=0.083,
+alpha_io=0.04,
+b_wl_io=1.667,
+c3_io='no',
+can_struct_a_io=1.0,
+catch0_io=0.5,
+dcatch_dlai_io=0.05,
+dgl_dm_io=0.0,
+dgl_dt_io=0.0,
+dqcrit_io=0.075,
+ds_jmax_io=646.0,
+ds_vcmax_io=649.0,
+dust_veg_scj_io=1.0,
+dz0v_dh_io=1.0e-1,
+emis_pft_io=0.98,
+eta_sl_io=0.01,
+f0_io=0.800,
+fd_io=0.025,
+fsmc_of_io=0.0,
+fsmc_p0_io=0.6,
+g_leaf_0_io=0.25,
+glmin_io=1.0e-6,
+gsoil_f_io=1.0,
+hw_sw_io=0.5,
+infil_f_io=2.0,
+kext_io=1.0,
+kn_io=0.78,
+knl_io=0.2,
+kpar_io=0.5,
+lai_alb_lim_io=0.005,
+lma_io=0.1370,
+neff_io=0.4e-3,
+nl0_io=0.030,
+nmass_io=0.0131,
+nr_io=0.0084,
+nr_nl_io=1.0,
+ns_nl_io=1.0,
+nsw_io=0.0202,
+omega_io=0.135,
+omnir_io=0.787,
+orient_io='spherical',
+pft_name_io='c4_grass',
+q10_leaf_io=2.0,
+r_grow_io=0.25,
+rootd_ft_io=0.5,
+sigl_io=0.0500,
+tleaf_of_io=258.15,
+tlow_io=13.0,
+tupp_io=45.0,
+vint_io=0.00,
+vsl_io=10.24,
+z0hm_pft_io=0.01,
+z0v_io=0.22,
+/
+&jules_pftparm
+a_wl_io=0.65,
+a_ws_io=10.0,
+act_jmax_io=50.0e3,
+act_vcmax_io=72.0e3,
+albsnc_max_io=2.5e-1,
+albsnc_min_io=3.0e-1,
+alnir_io=0.272,
+alpar_io=0.041,
+alpha_io=0.08,
+b_wl_io=1.667,
+c3_io='yes',
+can_struct_a_io=1.0,
+catch0_io=0.5,
+dcatch_dlai_io=0.05,
+dgl_dm_io=0.0,
+dgl_dt_io=9.0,
+dqcrit_io=0.060,
+ds_jmax_io=646.0,
+ds_vcmax_io=649.0,
+dust_veg_scj_io=0.0,
+dz0v_dh_io=5.0e-2,
+emis_pft_io=0.99,
+eta_sl_io=0.01,
+f0_io=0.875,
+fd_io=0.015,
+fsmc_of_io=0.0,
+fsmc_p0_io=0.6,
+g_leaf_0_io=0.25,
+glmin_io=1.0e-6,
+gsoil_f_io=1.0,
+hw_sw_io=0.5,
+infil_f_io=4.0,
+kext_io=0.5,
+kn_io=0.78,
+knl_io=0.2,
+kpar_io=0.5,
+lai_alb_lim_io=0.005,
+lma_io=0.2263,
+neff_io=0.8e-3,
+nl0_io=0.030,
+nmass_io=0.0115,
+nr_io=0.00784,
+nr_nl_io=1.0,
+ns_nl_io=0.1,
+nsw_io=0.0083,
+omega_io=0.083,
+omnir_io=0.545,
+orient_io='spherical',
+pft_name_io='ndl_leaf',
+q10_leaf_io=2.0,
+r_grow_io=0.25,
+rootd_ft_io=1.0,
+sigl_io=0.1000,
+tleaf_of_io=243.15,
+tlow_io=-5.0,
+tupp_io=31.0,
+vint_io=6.32,
+vsl_io=18.15,
+z0hm_pft_io=1.0,
+z0v_io=1.1,
+/
+&jules_pftparm
+a_wl_io=0.10,
+a_ws_io=10.0,
+act_jmax_io=50.0e3,
+act_vcmax_io=72.0e3,
+albsnc_max_io=4.0e-1,
+albsnc_min_io=8.0e-1,
+alnir_io=0.395,
+alpar_io=0.074,
+alpha_io=0.08,
+b_wl_io=1.667,
+c3_io='yes',
+can_struct_a_io=1.0,
+catch0_io=0.5,
+dcatch_dlai_io=0.05,
+dgl_dm_io=0.0,
+dgl_dt_io=9.0,
+dqcrit_io=0.100,
+ds_jmax_io=646.0,
+ds_vcmax_io=649.0,
+dust_veg_scj_io=0.5,
+dz0v_dh_io=1.0e-1,
+emis_pft_io=0.98,
+eta_sl_io=0.01,
+f0_io=0.900,
+fd_io=0.015,
+fsmc_of_io=0.0,
+fsmc_p0_io=0.6,
+g_leaf_0_io=0.25,
+glmin_io=1.0e-6,
+gsoil_f_io=1.0,
+hw_sw_io=0.5,
+infil_f_io=2.0,
+kext_io=0.5,
+kn_io=0.78,
+knl_io=0.2,
+kpar_io=0.5,
+lai_alb_lim_io=0.005,
+lma_io=0.0695,
+neff_io=0.8e-3,
+nl0_io=0.030,
+nmass_io=0.0219,
+nr_io=0.01726,
+nr_nl_io=1.0,
+ns_nl_io=0.1,
+nsw_io=0.0072,
+omega_io=0.115,
+omnir_io=0.785,
+orient_io='spherical',
+pft_name_io='shrub',
+q10_leaf_io=2.0,
+r_grow_io=0.25,
+rootd_ft_io=0.5,
+sigl_io=0.0500,
+tleaf_of_io=243.15,
+tlow_io=0.0,
+tupp_io=36.0,
+vint_io=14.71,
+vsl_io=23.15,
+z0hm_pft_io=0.01,
+z0v_io=1.0,
 /
 &jules_radiation
 i_sea_alb_method='jin',
@@ -260,6 +556,7 @@ l_niso_direct=.true.,
 l_partition_albsoil=.true.,
 l_sea_alb_var_chl=.true.,
 l_spec_alb_bs=.false.,
+l_spec_albedo=.true.,
 ratio_albsoil=2.0,
 swdn_frac_albsoil=0.5,
 /
@@ -345,8 +642,11 @@ urban=6,
 /
 &jules_vegetation
 can_rad_mod='six',
+l_bvoc_emis=.false.,
 l_limit_canhc=.true.,
 l_spec_veg_z0=.true.,
+photo_model='collatz',
+stomata_model='jacobs',
 /
 &logging
 log_to_rank_zero_only=.false.,