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@benoistlaurent
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Includes cli refactoring as well

- Segment: fixes design issue that allowed Segment to be initialized with wrong sequence
- SegmentRead: validates number_of_atoms
- InventoryRead: validates total_number_of_atoms
@benoistlaurent benoistlaurent marked this pull request as ready for review November 17, 2025 15:46
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A structure file (.gro, .pdb) contains coordinates. What kind of files do you have in mind?

@benoistlaurent benoistlaurent marked this pull request as draft November 18, 2025 09:16
- Raises IOError from MDAnalysis error when MDAnalysis.Universe raises
- Raises MDAnalysis.exceptions.NoDataError when no coordinates have been
  read
- Minor refactoring
@benoistlaurent benoistlaurent changed the title Can you a coordinates file in addition to the structure file Can use a coordinates file in addition to the structure file + small improvements Nov 18, 2025
@benoistlaurent benoistlaurent marked this pull request as ready for review November 18, 2025 15:31
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@benoistlaurent could you see why the CI had failed?

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Thanks @benoistlaurent

@pierrepo pierrepo merged commit aaa21ee into main Nov 28, 2025
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@pierrepo pierrepo deleted the develop branch November 28, 2025 11:13
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2 participants