Code supplement: National data cube for environmental modelling and monitoring

This repository contains scripts for processing and managing datacube layers in the data cube project published by the Landscape Geoinformatics Lab: https://geokuup.ee/estonia?locale=en.

Zenodo repository:

Directories and files

datacube_layer_scripts:

• calc_nodata: Scripts for calculating nodata statistics for public COGs.
• prepare_features/ERA5_overlay: Scripts for downloading ERA5 data and generating tiled climate variables in GEE.
• spectral_diversity: Scripts for calculating spectral diversity based on seasonal median composites of Sentinel-2 bands.
• spectral_indices: Scripts for generating tiled spectral index images in GEE.
• source_svc.sh: Set path for Google credentials. This helper script is used for granting Google bucket access during HPC jobs.

generate_datacube_cogs: Scripts for generating public COGs from internal Google bucket tiles.

extract_indices_values: Scripts for extracting values and statistics for points and polygons from public spectral index COGs via STAC.